Variant report

Variant	rs955191
Chromosome Location	chr6:131158670-131158671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1114644	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968295	0.90[ASN][1000 genomes]
rs12333037	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1571911	0.84[CEU][hapmap]
rs1582055	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2008598	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2027117	0.84[CEU][hapmap]
rs2039509	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2039830	0.84[CEU][hapmap]
rs2183969	0.85[CEU][hapmap]
rs2184408	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2236080	1.00[ASN][1000 genomes]
rs2839942	0.80[CEU][hapmap]
rs3777439	0.90[ASN][1000 genomes]
rs3777446	0.90[ASN][1000 genomes]
rs3822862	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4075265	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs4895897	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4895898	0.85[CEU][hapmap]
rs55825065	0.90[ASN][1000 genomes]
rs56287869	0.90[ASN][1000 genomes]
rs58072193	0.90[ASN][1000 genomes]
rs60609111	1.00[ASN][1000 genomes]
rs6536	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6569706	0.83[EUR][1000 genomes]
rs6906068	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6907284	0.84[CEU][hapmap]
rs6907608	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6910788	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6914649	1.00[ASN][1000 genomes]
rs6921455	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6922872	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6933789	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938309	0.80[CEU][hapmap]
rs6938735	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6940163	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73629702	0.90[ASN][1000 genomes]
rs73631003	0.90[ASN][1000 genomes]
rs73632204	0.90[ASN][1000 genomes]
rs73632239	0.90[ASN][1000 genomes]
rs73774316	0.90[ASN][1000 genomes]
rs73774318	0.90[ASN][1000 genomes]
rs73774322	0.90[ASN][1000 genomes]
rs73775303	1.00[ASN][1000 genomes]
rs73775313	0.90[ASN][1000 genomes]
rs73775315	0.90[ASN][1000 genomes]
rs73775327	0.90[ASN][1000 genomes]
rs73775329	0.81[ASN][1000 genomes]
rs73775330	0.90[ASN][1000 genomes]
rs73775331	0.90[ASN][1000 genomes]
rs73775333	0.90[ASN][1000 genomes]
rs761835	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7738572	0.80[CEU][hapmap]
rs7741462	0.84[CEU][hapmap]
rs7747303	0.90[ASN][1000 genomes]
rs7748468	0.80[CEU][hapmap]
rs7754229	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7754351	0.85[CEU][hapmap]
rs7762876	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7763473	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7764383	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766004	0.83[CEU][hapmap]
rs7768048	0.84[CEU][hapmap]
rs7775288	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375777	0.84[EUR][1000 genomes]
rs9483190	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs998228	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
6	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
7	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:131152400-131159400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:131152400-131161800	Strong transcription	Fetal Intestine Large	intestine
12	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
13	chr6:131153400-131159600	Weak transcription	Fetal Stomach	stomach
14	chr6:131153600-131162400	Weak transcription	Fetal Lung	lung
15	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:131154600-131160800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:131155000-131160200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
19	chr6:131156200-131159800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:131156200-131161000	Genic enhancers	Liver	Liver
21	chr6:131157200-131159600	Weak transcription	NHLF	lung
22	chr6:131157400-131160000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:131157600-131159600	Weak transcription	Dnd41	blood
24	chr6:131157600-131170200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:131157800-131161400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:131157800-131162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:131157800-131163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:131157800-131168200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:131157800-131170200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:131158000-131159600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:131158000-131160000	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:131158000-131172200	Weak transcription	Brain Anterior Caudate	brain
33	chr6:131158200-131159600	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:131158200-131160000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:131158200-131160000	Weak transcription	Brain Substantia Nigra	brain
36	chr6:131158200-131162200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:131158200-131163000	Strong transcription	HepG2	liver
38	chr6:131158200-131173800	Weak transcription	NH-A	brain
39	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
41	chr6:131158200-131214400	Weak transcription	Lung	lung
42	chr6:131158400-131160800	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:131158400-131163000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr6:131158400-131168200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:131158600-131158800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:131158600-131158800	Enhancers	Brain Angular Gyrus	brain
47	chr6:131158600-131160000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:131158600-131160800	Weak transcription	Primary B cells from cord blood	blood
49	chr6:131158600-131174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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