Variant report

Variant	rs7754229
Chromosome Location	chr6:131234443-131234444
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499180	1.00[CHB][hapmap]
rs1114644	0.90[ASN][1000 genomes]
rs11968011	1.00[CHB][hapmap]
rs11968295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406456	1.00[CHB][hapmap]
rs1528863	1.00[CHB][hapmap]
rs17059615	1.00[EUR][1000 genomes]
rs17059616	1.00[EUR][1000 genomes]
rs17060018	1.00[CHB][hapmap]
rs1977577	1.00[CHB][hapmap]
rs2039509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2236080	0.90[ASN][1000 genomes]
rs3777439	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777446	1.00[ASN][1000 genomes]
rs3822862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672705	1.00[EUR][1000 genomes]
rs58072193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60609111	0.90[ASN][1000 genomes]
rs6906068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914649	0.90[ASN][1000 genomes]
rs6922872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933789	0.90[ASN][1000 genomes]
rs6940163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73629700	1.00[EUR][1000 genomes]
rs73629702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73632204	1.00[ASN][1000 genomes]
rs73632239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775303	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775305	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73775313	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775315	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775327	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775329	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775330	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764383	0.90[ASN][1000 genomes]
rs7766938	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7775288	0.90[ASN][1000 genomes]
rs871628	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9483190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955191	0.90[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
2	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
4	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:131222400-131238200	Weak transcription	Dnd41	blood
7	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:131222600-131241200	Weak transcription	A549	lung
9	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
12	chr6:131229600-131245400	Weak transcription	NHLF	lung
13	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
14	chr6:131229600-131249600	Weak transcription	Osteobl	bone
15	chr6:131229800-131242400	Weak transcription	HepG2	liver
16	chr6:131230600-131236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:131233000-131234600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:131233000-131234600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:131233000-131234600	Enhancers	Brain Anterior Caudate	brain
20	chr6:131233000-131234600	Enhancers	Brain Hippocampus Middle	brain
21	chr6:131233000-131234600	Enhancers	Brain Substantia Nigra	brain
22	chr6:131233000-131234600	Enhancers	Left Ventricle	heart
23	chr6:131233000-131234800	Enhancers	Brain Cingulate Gyrus	brain
24	chr6:131233000-131234800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:131233000-131234800	Enhancers	HSMM	muscle
26	chr6:131233000-131235800	Enhancers	Fetal Muscle Leg	muscle
27	chr6:131233600-131235200	Enhancers	HSMMtube	muscle
28	chr6:131233800-131234600	Enhancers	Pancreas	Pancrea
29	chr6:131233800-131234800	Enhancers	GM12878-XiMat	blood
30	chr6:131233800-131241400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:131234000-131234600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:131234000-131234800	Enhancers	Primary B cells from peripheral blood	blood
33	chr6:131234000-131234800	Enhancers	Primary T cells from cord blood	blood
34	chr6:131234000-131234800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:131234000-131234800	Enhancers	Fetal Thymus	thymus
36	chr6:131234000-131250200	Weak transcription	Ovary	ovary
37	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
38	chr6:131234200-131234600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:131234200-131234600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:131234200-131234600	Enhancers	Primary hematopoietic stem cells	blood
41	chr6:131234200-131234600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr6:131234200-131234600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr6:131234200-131234600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:131234200-131234600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:131234200-131234800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:131234200-131234800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:131234200-131234800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:131234200-131234800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:131234200-131234800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr6:131234200-131234800	Enhancers	Thymus	Thymus

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