Variant report

Variant	rs7764383
Chromosome Location	chr6:131141043-131141044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10499180	0.83[CHD][hapmap]
rs1114644	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968011	0.83[CHD][hapmap]
rs11968295	0.90[ASN][1000 genomes]
rs12333037	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1334689	0.83[TSI][hapmap]
rs1571911	0.82[CEU][hapmap]
rs1582055	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2008598	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs2027117	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs2039509	0.84[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2039830	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs2183969	0.84[CEU][hapmap]
rs2184408	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2236080	1.00[ASN][1000 genomes]
rs3777439	0.90[ASN][1000 genomes]
rs3777446	0.90[ASN][1000 genomes]
rs3822862	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4075265	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs4895897	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs4895898	0.84[CEU][hapmap]
rs55825065	0.90[ASN][1000 genomes]
rs56287869	0.90[ASN][1000 genomes]
rs58072193	0.90[ASN][1000 genomes]
rs60609111	1.00[ASN][1000 genomes]
rs6536	0.89[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs6569709	0.85[TSI][hapmap]
rs6906068	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6907284	0.84[CEU][hapmap]
rs6907608	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6910788	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6914649	1.00[ASN][1000 genomes]
rs6921455	0.89[EUR][1000 genomes]
rs6922872	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6933789	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938735	0.82[EUR][1000 genomes]
rs6940163	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73629702	0.90[ASN][1000 genomes]
rs73631003	0.90[ASN][1000 genomes]
rs73632204	0.90[ASN][1000 genomes]
rs73632239	0.90[ASN][1000 genomes]
rs73774316	0.90[ASN][1000 genomes]
rs73774318	0.90[ASN][1000 genomes]
rs73774322	0.90[ASN][1000 genomes]
rs73775303	1.00[ASN][1000 genomes]
rs73775313	0.90[ASN][1000 genomes]
rs73775315	0.90[ASN][1000 genomes]
rs73775327	0.90[ASN][1000 genomes]
rs73775329	0.81[ASN][1000 genomes]
rs73775330	0.90[ASN][1000 genomes]
rs73775331	0.90[ASN][1000 genomes]
rs73775333	0.90[ASN][1000 genomes]
rs761835	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7741462	0.83[CEU][hapmap]
rs7747303	0.90[ASN][1000 genomes]
rs7754229	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7754351	0.84[CEU][hapmap]
rs7762876	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7763473	0.89[EUR][1000 genomes]
rs7766004	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs7766938	0.83[CHD][hapmap]
rs7768048	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs7775288	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871628	0.83[CHD][hapmap]
rs9285468	0.85[TSI][hapmap]
rs9375777	0.81[EUR][1000 genomes]
rs9388867	0.83[TSI][hapmap]
rs9483190	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9492764	0.80[TSI][hapmap]
rs955191	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998228	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7764383	ARG1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131141800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:131132000-131159200	Weak transcription	HSMM	muscle
3	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
4	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
5	chr6:131138400-131147400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:131138600-131142600	Weak transcription	HepG2	liver

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