The 2.0 version of rSNPBase

Variant report

Variant rs3777439
Chromosome Location chr6:131201959-131201960
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:131149400-131213200 Weak transcription Pancreas Pancrea
2 chr6:131151600-131216600 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr6:131158200-131214400 Weak transcription Lung lung
4 chr6:131159000-131229000 Weak transcription Colonic Mucosa Colon
5 chr6:131168800-131214600 Weak transcription Fetal Kidney kidney
6 chr6:131170400-131217400 Weak transcription Psoas Muscle Psoas
7 chr6:131170600-131213800 Weak transcription GM12878-XiMat blood
8 chr6:131171200-131209600 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr6:131171200-131223200 Weak transcription Right Ventricle heart
10 chr6:131171400-131220200 Weak transcription Fetal Brain Male brain
11 chr6:131173000-131207000 Weak transcription Brain Substantia Nigra brain
12 chr6:131175000-131222400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr6:131175200-131214000 Weak transcription H9 Cell Line embryonic stem cell
14 chr6:131175400-131203600 Weak transcription A549 lung
15 chr6:131175400-131211200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr6:131175600-131205400 Weak transcription NH-A brain
17 chr6:131175600-131221600 Weak transcription Rectal Smooth Muscle rectum
18 chr6:131177200-131209200 Weak transcription HUVEC blood vessel
19 chr6:131179200-131214000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr6:131179400-131222400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr6:131179600-131210600 Weak transcription NHEK skin
22 chr6:131179600-131215000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr6:131180000-131203200 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr6:131181400-131214400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr6:131185800-131214400 Weak transcription Thymus Thymus
26 chr6:131187000-131203200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr6:131187000-131207000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr6:131187000-131214400 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr6:131187000-131223200 Weak transcription Gastric stomach
30 chr6:131187200-131216400 Weak transcription H1 Cell Line embryonic stem cell
31 chr6:131187400-131208600 Weak transcription Brain Hippocampus Middle brain
32 chr6:131187600-131203400 Weak transcription Primary B cells from peripheral blood blood
33 chr6:131188200-131216400 Weak transcription HSMMtube muscle
34 chr6:131188600-131203200 Weak transcription NHDF-Ad bronchial
35 chr6:131188800-131203600 Weak transcription Placenta Placenta
36 chr6:131188800-131208800 Weak transcription Primary B cells from cord blood blood
37 chr6:131190400-131210600 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr6:131190400-131227000 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr6:131190800-131210800 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr6:131190800-131224200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr6:131191000-131203600 Weak transcription Fetal Intestine Large intestine
42 chr6:131191000-131234400 Weak transcription Esophagus oesophagus
43 chr6:131191200-131202600 Weak transcription Stomach Smooth Muscle stomach
44 chr6:131191200-131203200 Weak transcription Brain Cingulate Gyrus brain
45 chr6:131191200-131203400 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr6:131191200-131203600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr6:131191200-131203800 Weak transcription Aorta Aorta
48 chr6:131191200-131204800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr6:131191200-131208400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr6:131191200-131208600 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015