Variant report

Variant	rs7775288
Chromosome Location	chr6:131135839-131135840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1114644	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968295	0.90[ASN][1000 genomes]
rs12333037	0.90[ASN][1000 genomes]
rs1413753	0.81[EUR][1000 genomes]
rs1582055	0.89[EUR][1000 genomes]
rs2008598	0.85[EUR][1000 genomes]
rs2039509	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2236080	1.00[ASN][1000 genomes]
rs3777439	0.90[ASN][1000 genomes]
rs3777446	0.90[ASN][1000 genomes]
rs3822862	0.90[ASN][1000 genomes]
rs4895897	0.89[EUR][1000 genomes]
rs55825065	0.90[ASN][1000 genomes]
rs56287869	0.90[ASN][1000 genomes]
rs58072193	0.90[ASN][1000 genomes]
rs60609111	1.00[ASN][1000 genomes]
rs6906068	0.90[ASN][1000 genomes]
rs6907608	0.90[ASN][1000 genomes]
rs6908154	0.81[EUR][1000 genomes]
rs6908659	0.81[EUR][1000 genomes]
rs6910788	0.90[ASN][1000 genomes]
rs6914649	1.00[ASN][1000 genomes]
rs6921455	0.85[EUR][1000 genomes]
rs6922872	0.90[ASN][1000 genomes]
rs6933789	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938735	0.86[EUR][1000 genomes]
rs6940163	1.00[ASN][1000 genomes]
rs73629702	0.90[ASN][1000 genomes]
rs73631003	0.90[ASN][1000 genomes]
rs73632204	0.90[ASN][1000 genomes]
rs73632239	0.90[ASN][1000 genomes]
rs73774316	0.90[ASN][1000 genomes]
rs73774318	0.90[ASN][1000 genomes]
rs73774322	0.90[ASN][1000 genomes]
rs73775303	1.00[ASN][1000 genomes]
rs73775313	0.90[ASN][1000 genomes]
rs73775315	0.90[ASN][1000 genomes]
rs73775327	0.90[ASN][1000 genomes]
rs73775329	0.81[ASN][1000 genomes]
rs73775330	0.90[ASN][1000 genomes]
rs73775331	0.90[ASN][1000 genomes]
rs73775333	0.90[ASN][1000 genomes]
rs7747303	0.90[ASN][1000 genomes]
rs7754229	0.90[ASN][1000 genomes]
rs7762876	0.90[ASN][1000 genomes]
rs7763473	0.85[EUR][1000 genomes]
rs7764383	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375777	0.84[EUR][1000 genomes]
rs9388858	0.81[EUR][1000 genomes]
rs9483190	0.90[ASN][1000 genomes]
rs955191	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131138000	Weak transcription	Adipose Nuclei	Adipose
2	chr6:131132000-131141800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:131132000-131159200	Weak transcription	HSMM	muscle
4	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
5	chr6:131133600-131136000	Weak transcription	Liver	Liver
6	chr6:131135400-131136800	Enhancers	HepG2	liver
7	chr6:131135800-131138200	Enhancers	Fetal Intestine Small	intestine
8	chr6:131135800-131138400	Enhancers	Fetal Intestine Large	intestine

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