Variant report

Variant	rs6914649
Chromosome Location	chr6:131151145-131151146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499180	0.83[CHD][hapmap]
rs1114644	1.00[ASN][1000 genomes]
rs11968011	0.83[CHD][hapmap]
rs11968295	0.90[ASN][1000 genomes]
rs12333037	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2039509	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2236080	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777439	0.90[ASN][1000 genomes]
rs3777446	0.90[ASN][1000 genomes]
rs3822862	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs55825065	0.90[ASN][1000 genomes]
rs56287869	0.90[ASN][1000 genomes]
rs58072193	0.90[ASN][1000 genomes]
rs60609111	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906068	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6907608	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6910788	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6922872	0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[ASN][1000 genomes]
rs6933789	1.00[ASN][1000 genomes]
rs6940163	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73629702	0.90[ASN][1000 genomes]
rs73631003	0.90[ASN][1000 genomes]
rs73632204	0.90[ASN][1000 genomes]
rs73632239	0.90[ASN][1000 genomes]
rs73774316	0.90[ASN][1000 genomes]
rs73774318	0.90[ASN][1000 genomes]
rs73774322	0.90[ASN][1000 genomes]
rs73775303	1.00[ASN][1000 genomes]
rs73775313	0.90[ASN][1000 genomes]
rs73775315	0.90[ASN][1000 genomes]
rs73775327	0.90[ASN][1000 genomes]
rs73775329	0.81[ASN][1000 genomes]
rs73775330	0.90[ASN][1000 genomes]
rs73775331	0.90[ASN][1000 genomes]
rs73775333	0.90[ASN][1000 genomes]
rs7747303	0.90[ASN][1000 genomes]
rs7754229	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7762876	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7764383	1.00[ASN][1000 genomes]
rs7766938	0.83[CHD][hapmap]
rs7775288	1.00[ASN][1000 genomes]
rs871628	0.83[CHD][hapmap]
rs9483190	0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs955191	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131148000-131157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:131148600-131151400	Active TSS	Fetal Intestine Small	intestine
7	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:131149200-131151200	Enhancers	Fetal Stomach	stomach
10	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
11	chr6:131149600-131152400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
13	chr6:131149800-131151800	Flanking Active TSS	Liver	Liver
14	chr6:131150000-131151600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:131150000-131154800	Weak transcription	Aorta	Aorta
16	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:131150600-131151200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:131150600-131151600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
19	chr6:131150600-131151600	Transcr. at gene 5' and 3'	HepG2	liver
20	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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