Variant report

Variant	rs55825065
Chromosome Location	chr6:131239175-131239176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1114644	0.90[ASN][1000 genomes]
rs11968295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059615	1.00[EUR][1000 genomes]
rs17059616	1.00[EUR][1000 genomes]
rs2039509	1.00[ASN][1000 genomes]
rs2236080	0.90[ASN][1000 genomes]
rs3777439	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777446	1.00[ASN][1000 genomes]
rs3822862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672705	1.00[EUR][1000 genomes]
rs58072193	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60609111	0.90[ASN][1000 genomes]
rs6906068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907608	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910788	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914649	0.90[ASN][1000 genomes]
rs6922872	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933789	0.90[ASN][1000 genomes]
rs6940163	0.90[ASN][1000 genomes]
rs73629700	1.00[EUR][1000 genomes]
rs73629702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73632204	1.00[ASN][1000 genomes]
rs73632239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774318	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774322	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775303	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775305	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73775313	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775315	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775327	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775329	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775330	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747303	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754229	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764383	0.90[ASN][1000 genomes]
rs7775288	0.90[ASN][1000 genomes]
rs9483190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955191	0.90[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131222600-131241200	Weak transcription	A549	lung
6	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:131229600-131245400	Weak transcription	NHLF	lung
10	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
11	chr6:131229600-131249600	Weak transcription	Osteobl	bone
12	chr6:131229800-131242400	Weak transcription	HepG2	liver
13	chr6:131233800-131241400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:131234000-131250200	Weak transcription	Ovary	ovary
15	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
16	chr6:131234600-131244200	Weak transcription	Brain Substantia Nigra	brain
17	chr6:131234600-131244200	Weak transcription	Small Intestine	intestine
18	chr6:131234600-131244600	Weak transcription	Left Ventricle	heart
19	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
22	chr6:131234800-131244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:131234800-131245000	Weak transcription	HSMM	muscle
24	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
28	chr6:131235800-131244200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:131237000-131239400	Weak transcription	Fetal Lung	lung
31	chr6:131237800-131239400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:131238000-131244800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:131238200-131239200	Strong transcription	Dnd41	blood
34	chr6:131238400-131242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
38	chr6:131239000-131239200	Enhancers	Duodenum Smooth Muscle	Duodenum

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