Variant report
| Variant | rs56672705 |
|---|---|
| Chromosome Location | chr6:131111591-131111592 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11968295 | 1.00[EUR][1000 genomes] |
| rs12333037 | 1.00[EUR][1000 genomes] |
| rs17059615 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17059616 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3777439 | 1.00[EUR][1000 genomes] |
| rs3822862 | 1.00[EUR][1000 genomes] |
| rs55825065 | 1.00[EUR][1000 genomes] |
| rs56287869 | 1.00[EUR][1000 genomes] |
| rs58072193 | 1.00[EUR][1000 genomes] |
| rs6906068 | 1.00[EUR][1000 genomes] |
| rs6907608 | 1.00[EUR][1000 genomes] |
| rs6910788 | 1.00[EUR][1000 genomes] |
| rs6922872 | 1.00[EUR][1000 genomes] |
| rs73629700 | 0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73629702 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73631003 | 1.00[EUR][1000 genomes] |
| rs73632239 | 1.00[EUR][1000 genomes] |
| rs73774316 | 1.00[EUR][1000 genomes] |
| rs73774318 | 1.00[EUR][1000 genomes] |
| rs73774322 | 1.00[EUR][1000 genomes] |
| rs73775303 | 1.00[EUR][1000 genomes] |
| rs73775305 | 1.00[EUR][1000 genomes] |
| rs73775313 | 1.00[EUR][1000 genomes] |
| rs73775327 | 1.00[EUR][1000 genomes] |
| rs73775329 | 1.00[EUR][1000 genomes] |
| rs73775331 | 1.00[EUR][1000 genomes] |
| rs73775333 | 1.00[EUR][1000 genomes] |
| rs7747303 | 1.00[EUR][1000 genomes] |
| rs7754229 | 1.00[EUR][1000 genomes] |
| rs7762876 | 1.00[EUR][1000 genomes] |
| rs9483190 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533971 | chr6:130490694-131172051 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv604664 | chr6:131004998-131115817 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1025019 | chr6:131074711-131116070 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv604665 | chr6:131077027-131115817 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv604666 | chr6:131078180-131122295 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:131110200-131113200 | Weak transcription | HepG2 | liver |
| 2 | chr6:131111000-131117000 | Weak transcription | Lung | lung |
| 3 | chr6:131111200-131115000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
