Variant report

Variant	rs11968295
Chromosome Location	chr6:131119300-131119301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1114644	0.90[ASN][1000 genomes]
rs12333037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059615	1.00[EUR][1000 genomes]
rs17059616	1.00[EUR][1000 genomes]
rs2039509	1.00[ASN][1000 genomes]
rs2236080	0.90[ASN][1000 genomes]
rs3777439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777446	1.00[ASN][1000 genomes]
rs3822862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672705	1.00[EUR][1000 genomes]
rs58072193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60609111	0.90[ASN][1000 genomes]
rs6906068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914649	0.90[ASN][1000 genomes]
rs6922872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933789	0.90[ASN][1000 genomes]
rs6940163	0.90[ASN][1000 genomes]
rs73629700	1.00[EUR][1000 genomes]
rs73629702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73632204	1.00[ASN][1000 genomes]
rs73632239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775303	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775305	1.00[EUR][1000 genomes]
rs73775313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775315	1.00[ASN][1000 genomes]
rs73775327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775329	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775330	1.00[ASN][1000 genomes]
rs73775331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754229	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764383	0.90[ASN][1000 genomes]
rs7775288	0.90[ASN][1000 genomes]
rs9483190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955191	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131117800-131122000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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