Variant report

Variant	rs6910788
Chromosome Location	chr6:131175416-131175417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10499180	1.00[CHB][hapmap]
rs1114644	0.90[ASN][1000 genomes]
rs11968011	1.00[CHB][hapmap]
rs11968295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406456	1.00[CHB][hapmap]
rs17059615	1.00[EUR][1000 genomes]
rs17059616	1.00[EUR][1000 genomes]
rs17060018	1.00[CHB][hapmap]
rs1977577	1.00[CHB][hapmap]
rs2039509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2236080	0.90[ASN][1000 genomes]
rs3777439	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777446	1.00[ASN][1000 genomes]
rs3822862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825065	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672705	1.00[EUR][1000 genomes]
rs58072193	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60609111	0.90[ASN][1000 genomes]
rs6906068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914649	0.90[ASN][1000 genomes]
rs6922872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933789	0.90[ASN][1000 genomes]
rs6940163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73629700	1.00[EUR][1000 genomes]
rs73629702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73632204	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73632239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774318	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774322	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775303	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775305	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73775313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73775327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775329	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775330	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775331	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764383	0.90[ASN][1000 genomes]
rs7766938	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7775288	0.90[ASN][1000 genomes]
rs871628	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9483190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955191	0.90[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
6	chr6:131158200-131214400	Weak transcription	Lung	lung
7	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
8	chr6:131160600-131179200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:131161600-131176800	Weak transcription	Dnd41	blood
11	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:131168600-131179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
15	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
16	chr6:131170200-131179000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:131170400-131178400	Weak transcription	NHEK	skin
18	chr6:131170400-131181200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
20	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
21	chr6:131170600-131178600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:131170600-131184600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
27	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
28	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:131171200-131175600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
32	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
33	chr6:131172200-131176000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:131172200-131176200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:131172600-131185600	Weak transcription	Gastric	stomach
36	chr6:131172600-131186600	Weak transcription	Brain Angular Gyrus	brain
37	chr6:131172800-131183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:131173000-131179200	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
41	chr6:131173200-131185200	Weak transcription	Thymus	Thymus
42	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
43	chr6:131173600-131175600	Enhancers	NHDF-Ad	bronchial
44	chr6:131173800-131175600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr6:131173800-131175600	Genic enhancers	HSMM	muscle
46	chr6:131173800-131175600	Enhancers	HSMMtube	muscle
47	chr6:131173800-131175600	Enhancers	NH-A	brain
48	chr6:131173800-131175600	Enhancers	Osteobl	bone
49	chr6:131174400-131175600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:131174400-131175600	Enhancers	HUES48 Cell Line	embryonic stem cell

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