Variant report

Variant	rs1406456
Chromosome Location	chr6:131370208-131370209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131370012..131372653-chr6:131373371..131376105,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499180	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11968011	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12333037	1.00[CHB][hapmap]
rs1528863	1.00[CHB][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17060018	1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1977577	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2039509	1.00[CHB][hapmap]
rs2151070	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3822862	1.00[CHB][hapmap]
rs55677017	1.00[ASN][1000 genomes]
rs55741945	1.00[ASN][1000 genomes]
rs55812292	1.00[ASN][1000 genomes]
rs55909138	1.00[ASN][1000 genomes]
rs56009627	1.00[ASN][1000 genomes]
rs56059620	1.00[ASN][1000 genomes]
rs56091933	1.00[ASN][1000 genomes]
rs57155718	1.00[ASN][1000 genomes]
rs58822839	1.00[ASN][1000 genomes]
rs600306	1.00[CHB][hapmap]
rs602848	1.00[CHB][hapmap]
rs60446197	1.00[ASN][1000 genomes]
rs60773361	1.00[ASN][1000 genomes]
rs60836114	1.00[ASN][1000 genomes]
rs6906068	1.00[CHB][hapmap]
rs6907608	1.00[CHB][hapmap]
rs6908393	1.00[ASN][1000 genomes]
rs6910788	1.00[CHB][hapmap]
rs6922872	1.00[CHB][hapmap]
rs73621523	1.00[ASN][1000 genomes]
rs73621528	1.00[ASN][1000 genomes]
rs73621566	1.00[ASN][1000 genomes]
rs73621574	1.00[ASN][1000 genomes]
rs73621588	1.00[ASN][1000 genomes]
rs73623380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73623396	1.00[ASN][1000 genomes]
rs73623492	1.00[ASN][1000 genomes]
rs73625103	1.00[ASN][1000 genomes]
rs73625624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73774338	1.00[ASN][1000 genomes]
rs73774368	1.00[ASN][1000 genomes]
rs73774374	1.00[ASN][1000 genomes]
rs73774376	1.00[ASN][1000 genomes]
rs73774379	1.00[ASN][1000 genomes]
rs73775907	1.00[ASN][1000 genomes]
rs73775910	0.87[ASN][1000 genomes]
rs73775913	0.87[ASN][1000 genomes]
rs7741112	1.00[ASN][1000 genomes]
rs7754229	1.00[CHB][hapmap]
rs7761647	1.00[ASN][1000 genomes]
rs7762876	1.00[CHB][hapmap]
rs7766938	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs871628	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9483190	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:131351600-131374600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:131352400-131374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131356600-131375000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:131359000-131374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:131360800-131374800	Weak transcription	HSMM	muscle
8	chr6:131360800-131375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:131361400-131373800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:131363800-131371400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:131364000-131372200	Weak transcription	NHLF	lung
12	chr6:131364400-131372600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:131364400-131374600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:131367800-131374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:131368000-131372600	Weak transcription	HepG2	liver
16	chr6:131368200-131374800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:131368200-131375200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:131368800-131370800	Enhancers	Adipose Nuclei	Adipose
19	chr6:131369200-131372600	Weak transcription	Ovary	ovary
20	chr6:131369400-131370400	Enhancers	Brain Anterior Caudate	brain
21	chr6:131369400-131371000	Enhancers	Brain Hippocampus Middle	brain
22	chr6:131369400-131371000	Enhancers	Brain Substantia Nigra	brain
23	chr6:131369600-131370400	Enhancers	Fetal Lung	lung
24	chr6:131369600-131372200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:131369600-131372400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:131369600-131372800	Enhancers	NHDF-Ad	bronchial
27	chr6:131370000-131370600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:131370000-131370600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr6:131370000-131371200	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:131370000-131372200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:131370200-131370600	Enhancers	A549	lung
32	chr6:131370200-131371200	Enhancers	Fetal Stomach	stomach

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