The 2.0 version of rSNPBase

Variant report

Variant rs55909138
Chromosome Location chr6:131318271-131318272
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:131306800-131320000 Weak transcription Left Ventricle heart
2 chr6:131311400-131318400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr6:131312400-131318400 Weak transcription Fetal Muscle Leg muscle
4 chr6:131312600-131321800 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr6:131313000-131318400 Weak transcription Fetal Kidney kidney
6 chr6:131314800-131322200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr6:131314800-131325000 Weak transcription Fetal Muscle Trunk muscle
8 chr6:131315200-131321400 Weak transcription Duodenum Mucosa Duodenum
9 chr6:131315400-131318600 Weak transcription Right Atrium heart
10 chr6:131315400-131320000 Weak transcription Right Ventricle heart
11 chr6:131315600-131321800 Weak transcription Pancreas Pancrea
12 chr6:131315800-131318400 Weak transcription H1 Cell Line embryonic stem cell
13 chr6:131315800-131318600 Weak transcription H9 Cell Line embryonic stem cell
14 chr6:131315800-131320000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr6:131315800-131321400 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr6:131315800-131321800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr6:131315800-131321800 Weak transcription Lung lung
18 chr6:131315800-131323200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr6:131315800-131325800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr6:131316000-131318400 Weak transcription Placenta Amnion Placenta Amnion
21 chr6:131316600-131319000 Enhancers HUVEC blood vessel
22 chr6:131316800-131318400 Enhancers HUES64 Cell Line embryonic stem cell
23 chr6:131316800-131318400 Enhancers Brain Cingulate Gyrus brain
24 chr6:131316800-131319000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
25 chr6:131316800-131319000 Enhancers Osteobl bone
26 chr6:131316800-131319200 Enhancers Fetal Lung lung
27 chr6:131316800-131322200 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr6:131317000-131318400 Enhancers Brain Hippocampus Middle brain
29 chr6:131317200-131318600 Enhancers Brain Substantia Nigra brain
30 chr6:131317200-131318800 Enhancers NHLF lung
31 chr6:131317200-131319000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
32 chr6:131317200-131319000 Enhancers Muscle Satellite Cultured Cells --
33 chr6:131317200-131319000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
34 chr6:131317200-131319000 Enhancers Adipose Nuclei Adipose
35 chr6:131317200-131319000 Enhancers HepG2 liver
36 chr6:131317400-131318400 Enhancers HUES48 Cell Line embryonic stem cell
37 chr6:131317400-131318400 Enhancers Cortex derived primary cultured neurospheres brain
38 chr6:131317400-131318400 Weak transcription Colon Smooth Muscle Colon
39 chr6:131317400-131318400 Weak transcription Fetal Heart heart
40 chr6:131317400-131318600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr6:131317400-131318800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr6:131317400-131319000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr6:131317400-131319000 Enhancers Fetal Stomach stomach
44 chr6:131317400-131319000 Enhancers HSMM muscle
45 chr6:131317400-131319400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr6:131317400-131321600 Weak transcription Stomach Mucosa stomach
47 chr6:131317400-131322200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr6:131317600-131319000 Enhancers Rectal Smooth Muscle rectum
49 chr6:131317600-131320000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr6:131317600-131321400 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015