Variant report

Variant	rs871628
Chromosome Location	chr6:131276573-131276574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10499180	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11968011	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12333037	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1406456	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1528863	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17060018	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1977577	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039509	1.00[CHB][hapmap]
rs2151070	1.00[ASN][1000 genomes]
rs3777439	1.00[CEU][hapmap]
rs3822862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs55677017	1.00[ASN][1000 genomes]
rs55741945	1.00[ASN][1000 genomes]
rs55772976	1.00[EUR][1000 genomes]
rs55812292	1.00[ASN][1000 genomes]
rs55909138	1.00[ASN][1000 genomes]
rs56009627	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56059620	1.00[ASN][1000 genomes]
rs56091933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57155718	1.00[ASN][1000 genomes]
rs58822839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600306	1.00[CHB][hapmap]
rs602848	1.00[CHB][hapmap]
rs60446197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60773361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60836114	1.00[ASN][1000 genomes]
rs6906068	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6907608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs6908393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910788	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6922872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs6940163	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs73621523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621528	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73621574	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73621588	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73623380	1.00[ASN][1000 genomes]
rs73623396	1.00[ASN][1000 genomes]
rs73623492	1.00[ASN][1000 genomes]
rs73625103	1.00[ASN][1000 genomes]
rs73625624	1.00[ASN][1000 genomes]
rs73774338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774368	1.00[ASN][1000 genomes]
rs73774374	1.00[ASN][1000 genomes]
rs73774376	1.00[ASN][1000 genomes]
rs73774379	1.00[ASN][1000 genomes]
rs73775907	1.00[ASN][1000 genomes]
rs73775910	0.87[ASN][1000 genomes]
rs73775913	0.87[ASN][1000 genomes]
rs7741112	1.00[ASN][1000 genomes]
rs7754229	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7761647	1.00[ASN][1000 genomes]
rs7762876	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7766938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
5	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
6	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
9	chr6:131264800-131277800	Weak transcription	Gastric	stomach
10	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:131266000-131283800	Weak transcription	Lung	lung
12	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:131266800-131277200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
16	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:131267200-131277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:131267200-131277200	Weak transcription	Small Intestine	intestine
19	chr6:131267200-131281200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:131267400-131279600	Weak transcription	HMEC	breast
22	chr6:131267400-131280200	Weak transcription	Brain Anterior Caudate	brain
23	chr6:131267400-131281600	Weak transcription	GM12878-XiMat	blood
24	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
29	chr6:131267800-131288200	Weak transcription	NH-A	brain
30	chr6:131268200-131279400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:131268400-131279800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:131268400-131280600	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:131269000-131276800	Weak transcription	HUVEC	blood vessel
35	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
36	chr6:131269400-131286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:131271000-131279200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:131271400-131279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
40	chr6:131272400-131281800	Weak transcription	Fetal Thymus	thymus
41	chr6:131272600-131277600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:131272600-131277600	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:131272800-131276600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:131272800-131276600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:131272800-131277600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:131272800-131277800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:131273000-131277200	Strong transcription	HSMM	muscle
49	chr6:131273200-131277600	Strong transcription	Fetal Lung	lung
50	chr6:131273600-131277600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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