The 2.0 version of rSNPBase

Variant report

Variant rs55677017
Chromosome Location chr6:131321860-131321861
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:131314800-131322200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr6:131314800-131325000 Weak transcription Fetal Muscle Trunk muscle
3 chr6:131315800-131323200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr6:131315800-131325800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:131316800-131322200 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr6:131317400-131322200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr6:131317600-131322200 Weak transcription HMEC breast
8 chr6:131317600-131322400 Weak transcription Gastric stomach
9 chr6:131317600-131323200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr6:131318200-131322200 Weak transcription NHEK skin
11 chr6:131318600-131322200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr6:131318800-131325800 Weak transcription Fetal Thymus thymus
13 chr6:131318800-131328000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr6:131318800-131329200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr6:131319000-131322000 Weak transcription Muscle Satellite Cultured Cells --
16 chr6:131319000-131322200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr6:131319000-131322200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr6:131319000-131322200 Enhancers Brain Hippocampus Middle brain
19 chr6:131319000-131322200 Weak transcription HSMM muscle
20 chr6:131319000-131323200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr6:131319000-131323200 Weak transcription Fetal Kidney kidney
22 chr6:131319000-131323200 Weak transcription NH-A brain
23 chr6:131319000-131323200 Weak transcription Osteobl bone
24 chr6:131319000-131323400 Weak transcription Stomach Smooth Muscle stomach
25 chr6:131319000-131323400 Weak transcription A549 lung
26 chr6:131319000-131323400 Weak transcription NHDF-Ad bronchial
27 chr6:131319000-131324200 Weak transcription Colon Smooth Muscle Colon
28 chr6:131319000-131324800 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr6:131319000-131325000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr6:131319000-131325600 Weak transcription Rectal Smooth Muscle rectum
31 chr6:131319200-131323200 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr6:131319400-131322200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr6:131319400-131324800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr6:131319600-131324800 Weak transcription ES-WA7 Cell Line embryonic stem cell
35 chr6:131319800-131323200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr6:131320000-131322000 Enhancers iPS-20b Cell Line embryonic stem cell
37 chr6:131320400-131323200 Weak transcription Left Ventricle heart
38 chr6:131320400-131324600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr6:131320400-131325200 Weak transcription Right Ventricle heart
40 chr6:131321000-131322200 Enhancers Brain Cingulate Gyrus brain
41 chr6:131321000-131322200 Enhancers Fetal Lung lung
42 chr6:131321000-131322600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
43 chr6:131321000-131324000 Enhancers Brain Inferior Temporal Lobe brain
44 chr6:131321000-131326600 Enhancers HUES64 Cell Line embryonic stem cell
45 chr6:131321400-131322000 Enhancers Sigmoid Colon Sigmoid Colon
46 chr6:131321400-131322200 Enhancers Brain Substantia Nigra brain
47 chr6:131321400-131322200 Enhancers Duodenum Mucosa Duodenum
48 chr6:131321400-131322600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr6:131321400-131323400 Enhancers NHLF lung
50 chr6:131321400-131323600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015