Variant report

Variant	rs11968011
Chromosome Location	chr6:131314182-131314183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131308949..131310454-chr6:131311371..131314255,2	K562	blood:
2	chr6:131308949..131310665-chr6:131311371..131314257,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10499180	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12333037	1.00[CHB][hapmap]
rs1406456	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1528863	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17060018	1.00[CHB][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]
rs1977577	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2039509	1.00[CHB][hapmap]
rs2151070	1.00[ASN][1000 genomes]
rs3822862	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs55677017	1.00[ASN][1000 genomes]
rs55741945	1.00[ASN][1000 genomes]
rs55812292	1.00[ASN][1000 genomes]
rs55909138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56009627	1.00[ASN][1000 genomes]
rs56059620	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56091933	1.00[ASN][1000 genomes]
rs57155718	1.00[ASN][1000 genomes]
rs58822839	1.00[ASN][1000 genomes]
rs600306	1.00[CHB][hapmap]
rs602848	1.00[CHB][hapmap]
rs60446197	1.00[ASN][1000 genomes]
rs60773361	1.00[ASN][1000 genomes]
rs60836114	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6906068	1.00[CHB][hapmap]
rs6907608	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6908393	1.00[ASN][1000 genomes]
rs6910788	1.00[CHB][hapmap]
rs6922872	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6940163	1.00[CHD][hapmap]
rs73621523	1.00[ASN][1000 genomes]
rs73621528	1.00[ASN][1000 genomes]
rs73621566	1.00[ASN][1000 genomes]
rs73621574	1.00[ASN][1000 genomes]
rs73621588	1.00[ASN][1000 genomes]
rs73623380	1.00[ASN][1000 genomes]
rs73623396	1.00[ASN][1000 genomes]
rs73623492	1.00[ASN][1000 genomes]
rs73625103	1.00[ASN][1000 genomes]
rs73625624	1.00[ASN][1000 genomes]
rs73774338	1.00[ASN][1000 genomes]
rs73774368	1.00[ASN][1000 genomes]
rs73774374	1.00[ASN][1000 genomes]
rs73774376	1.00[ASN][1000 genomes]
rs73774379	1.00[ASN][1000 genomes]
rs73775907	1.00[ASN][1000 genomes]
rs73775910	0.87[ASN][1000 genomes]
rs73775913	0.87[ASN][1000 genomes]
rs7741112	1.00[ASN][1000 genomes]
rs7754229	1.00[CHB][hapmap]
rs7761647	1.00[ASN][1000 genomes]
rs7762876	1.00[CHB][hapmap]
rs7766938	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs871628	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs9483190	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131298800-131314800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:131300400-131314600	Weak transcription	Small Intestine	intestine
3	chr6:131303800-131315400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:131306800-131315200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131306800-131317000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:131306800-131317200	Weak transcription	NHLF	lung
7	chr6:131306800-131317400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:131306800-131320000	Weak transcription	Left Ventricle	heart
9	chr6:131308000-131315400	Weak transcription	Lung	lung
10	chr6:131308600-131314400	Weak transcription	Dnd41	blood
11	chr6:131309200-131317200	Weak transcription	Adipose Nuclei	Adipose
12	chr6:131310400-131316800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:131311400-131318400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:131312400-131314600	Weak transcription	Right Atrium	heart
15	chr6:131312400-131317000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:131312400-131318400	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:131312600-131314800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:131312600-131314800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:131312600-131317400	Weak transcription	Fetal Stomach	stomach
20	chr6:131312600-131321800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:131313000-131318400	Weak transcription	Fetal Kidney	kidney
22	chr6:131313200-131315400	Enhancers	A549	lung
23	chr6:131313200-131317000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:131313400-131315600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:131313400-131316800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:131313600-131315200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:131313600-131316800	Weak transcription	Fetal Lung	lung
28	chr6:131313600-131316800	Weak transcription	Osteobl	bone
29	chr6:131313600-131317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:131313800-131314800	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:131313800-131315000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:131313800-131315800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:131313800-131315800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:131313800-131316800	Weak transcription	NHEK	skin
35	chr6:131313800-131317600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:131314000-131314200	Flanking Active TSS	K562	blood
37	chr6:131314000-131315000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:131314000-131315000	Enhancers	Pancreas	Pancrea
39	chr6:131314000-131315800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:131314000-131315800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr6:131314000-131315800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:131314000-131315800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr6:131314000-131315800	Enhancers	HepG2	liver
44	chr6:131314000-131316800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:131314000-131317600	Enhancers	Placenta	Placenta
46	chr6:131314000-131318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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