Variant report

Variant	rs6908393
Chromosome Location	chr6:131288847-131288848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131287420..131290006-chr6:131292145..131295330,3	K562	blood:
2	chr6:131288021..131290598-chr6:131292488..131295330,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499180	1.00[ASN][1000 genomes]
rs11968011	1.00[ASN][1000 genomes]
rs1406456	1.00[ASN][1000 genomes]
rs1528863	1.00[ASN][1000 genomes]
rs17060018	1.00[ASN][1000 genomes]
rs1977577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151070	1.00[ASN][1000 genomes]
rs55677017	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55741945	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55772976	1.00[EUR][1000 genomes]
rs55812292	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55909138	1.00[ASN][1000 genomes]
rs56009627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56059620	1.00[ASN][1000 genomes]
rs56091933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57155718	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58822839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59271461	1.00[AMR][1000 genomes]
rs60446197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60773361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60836114	1.00[ASN][1000 genomes]
rs73621523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621566	1.00[ASN][1000 genomes]
rs73621574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621575	1.00[EUR][1000 genomes]
rs73621588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73623380	1.00[ASN][1000 genomes]
rs73623396	1.00[ASN][1000 genomes]
rs73623492	1.00[ASN][1000 genomes]
rs73625103	1.00[ASN][1000 genomes]
rs73625624	1.00[ASN][1000 genomes]
rs73774338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774368	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73774374	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73774376	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73774379	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775907	1.00[ASN][1000 genomes]
rs73775910	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73775913	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7741112	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7761647	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
4	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
5	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:131274400-131289000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:131277400-131290000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:131284400-131289200	Weak transcription	Left Ventricle	heart
9	chr6:131286000-131289200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:131286200-131289000	Enhancers	Osteobl	bone
11	chr6:131286200-131290800	Weak transcription	Liver	Liver
12	chr6:131286200-131293600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:131286800-131289200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:131286800-131289200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:131286800-131290200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:131286800-131291600	Active TSS	Aorta	Aorta
17	chr6:131287000-131289400	Enhancers	NHDF-Ad	bronchial
18	chr6:131287000-131290800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:131287200-131289200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:131287200-131289200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:131287200-131289800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:131287400-131289400	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:131287400-131289600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:131287400-131290800	Enhancers	Fetal Heart	heart
25	chr6:131287600-131289000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr6:131287600-131289000	Enhancers	Brain Angular Gyrus	brain
27	chr6:131287600-131289000	Enhancers	Brain Anterior Caudate	brain
28	chr6:131287600-131289200	Enhancers	Brain Substantia Nigra	brain
29	chr6:131287600-131289400	Enhancers	Fetal Brain Male	brain
30	chr6:131287600-131289800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:131287600-131289800	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:131287600-131291800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr6:131287800-131289200	Enhancers	Fetal Stomach	stomach
34	chr6:131287800-131289400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:131287800-131289600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:131288000-131289200	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr6:131288000-131289400	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr6:131288000-131289600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:131288000-131289600	Enhancers	Fetal Brain Female	brain
40	chr6:131288000-131289800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:131288200-131289400	Enhancers	HUVEC	blood vessel
42	chr6:131288200-131289800	Enhancers	NH-A	brain
43	chr6:131288200-131290400	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:131288200-131291600	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:131288400-131289000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:131288400-131289000	Weak transcription	Fetal Thymus	thymus
48	chr6:131288400-131289000	Flanking Active TSS	NHLF	lung
49	chr6:131288400-131289400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:131288400-131289400	Enhancers	Ovary	ovary

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