Variant report

Variant	rs73775913
Chromosome Location	chr6:131405809-131405810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10499180	0.87[ASN][1000 genomes]
rs11968011	0.87[ASN][1000 genomes]
rs1406456	0.87[ASN][1000 genomes]
rs1528863	0.87[ASN][1000 genomes]
rs17060018	0.87[ASN][1000 genomes]
rs1977577	0.87[ASN][1000 genomes]
rs2151070	0.87[ASN][1000 genomes]
rs55677017	0.96[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55741945	0.96[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55812292	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55909138	0.87[ASN][1000 genomes]
rs56009627	0.87[ASN][1000 genomes]
rs56059620	0.87[ASN][1000 genomes]
rs56091933	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs57155718	0.96[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58822839	0.87[ASN][1000 genomes]
rs60446197	0.87[ASN][1000 genomes]
rs60773361	0.87[ASN][1000 genomes]
rs60836114	0.87[ASN][1000 genomes]
rs6908393	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73621523	0.87[ASN][1000 genomes]
rs73621528	0.87[ASN][1000 genomes]
rs73621566	0.87[ASN][1000 genomes]
rs73621574	0.87[ASN][1000 genomes]
rs73621588	0.87[ASN][1000 genomes]
rs73623380	0.87[ASN][1000 genomes]
rs73623396	0.87[ASN][1000 genomes]
rs73623492	0.87[ASN][1000 genomes]
rs73625103	0.87[ASN][1000 genomes]
rs73625624	0.87[ASN][1000 genomes]
rs73774338	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73774368	0.96[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73774374	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73774376	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73774379	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73775907	0.87[ASN][1000 genomes]
rs73775910	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775914	0.87[ASN][1000 genomes]
rs7741112	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7761647	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7766938	0.87[ASN][1000 genomes]
rs871628	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv10623	chr6:131397221-131418195	Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131405400-131406000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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