Variant report

Variant	rs73621574
Chromosome Location	chr6:131296375-131296376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr6:131296321-131296885	HCT-116	colon:	n/a	chr6:131296633-131296642 chr6:131296632-131296641 chr6:131296631-131296643

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131293556..131298037-chr6:131298805..131301642,4	K562	blood:

Variant related genes	Relation type
EPB41L2	TF binding region
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499180	1.00[ASN][1000 genomes]
rs11968011	1.00[ASN][1000 genomes]
rs1406456	1.00[ASN][1000 genomes]
rs1528863	1.00[ASN][1000 genomes]
rs17060018	1.00[ASN][1000 genomes]
rs1977577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151070	1.00[ASN][1000 genomes]
rs55677017	1.00[ASN][1000 genomes]
rs55741945	1.00[ASN][1000 genomes]
rs55772976	1.00[EUR][1000 genomes]
rs55812292	1.00[ASN][1000 genomes]
rs55909138	1.00[ASN][1000 genomes]
rs56009627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56059620	1.00[ASN][1000 genomes]
rs56091933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57155718	1.00[ASN][1000 genomes]
rs58822839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60446197	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60773361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60836114	1.00[ASN][1000 genomes]
rs6908393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621523	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73621566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73621575	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73621588	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73623380	1.00[ASN][1000 genomes]
rs73623396	1.00[ASN][1000 genomes]
rs73623492	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73625103	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73625624	1.00[ASN][1000 genomes]
rs73774338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774368	1.00[ASN][1000 genomes]
rs73774374	1.00[ASN][1000 genomes]
rs73774376	1.00[ASN][1000 genomes]
rs73774379	1.00[ASN][1000 genomes]
rs73775907	1.00[ASN][1000 genomes]
rs73775910	0.87[ASN][1000 genomes]
rs73775913	0.87[ASN][1000 genomes]
rs7741112	1.00[ASN][1000 genomes]
rs7761647	1.00[ASN][1000 genomes]
rs7766938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871628	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
3	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:131289400-131296400	Weak transcription	HUVEC	blood vessel
5	chr6:131289600-131298200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:131289600-131300800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:131289800-131298000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:131291600-131298000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:131291600-131299200	Weak transcription	Pancreas	Pancrea
10	chr6:131291600-131299400	Weak transcription	Right Atrium	heart
11	chr6:131291800-131306200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:131292000-131299400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:131292200-131298200	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:131292400-131296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:131292400-131298400	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:131292400-131299600	Weak transcription	Fetal Stomach	stomach
17	chr6:131292400-131299800	Weak transcription	Left Ventricle	heart
18	chr6:131292400-131306400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:131292600-131296400	Weak transcription	NHDF-Ad	bronchial
20	chr6:131292600-131299400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:131292800-131299200	Weak transcription	Fetal Lung	lung
22	chr6:131292800-131299400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:131292800-131302000	Weak transcription	NHLF	lung
24	chr6:131294800-131298200	Enhancers	K562	blood
25	chr6:131295400-131298400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:131295400-131299800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:131295400-131301400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:131295600-131298000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:131295600-131298000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:131295600-131298000	Weak transcription	HepG2	liver
31	chr6:131295600-131299800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:131295600-131300000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:131295600-131301400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:131295600-131301400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:131296000-131296400	Enhancers	HSMM	muscle
36	chr6:131296000-131296800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:131296200-131296800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:131296200-131296800	Enhancers	Hela-S3	cervix

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