Variant report

Variant	rs6922872
Chromosome Location	chr6:131227965-131227966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499180	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1114644	0.90[ASN][1000 genomes]
rs11968011	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11968295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406456	1.00[CHB][hapmap]
rs1528863	1.00[CHB][hapmap]
rs17059615	1.00[EUR][1000 genomes]
rs17059616	1.00[EUR][1000 genomes]
rs17060018	1.00[CHB][hapmap]
rs1977577	1.00[CHB][hapmap]
rs2039509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2236080	0.90[ASN][1000 genomes]
rs3777439	1.00[CEU][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777446	1.00[ASN][1000 genomes]
rs3822862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825065	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672705	1.00[EUR][1000 genomes]
rs58072193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60609111	0.90[ASN][1000 genomes]
rs6906068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914649	0.90[ASN][1000 genomes]
rs6933789	0.90[ASN][1000 genomes]
rs6940163	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.84[MKK][hapmap];0.90[ASN][1000 genomes]
rs73629700	1.00[EUR][1000 genomes]
rs73629702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73631003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73632204	1.00[ASN][1000 genomes]
rs73632239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775303	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775305	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73775313	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775315	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775327	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775329	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73775330	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764383	0.90[ASN][1000 genomes]
rs7766938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs7775288	0.90[ASN][1000 genomes]
rs871628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs9483190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955191	0.90[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
2	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
3	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
4	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:131204400-131228600	Weak transcription	Stomach Mucosa	stomach
6	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
7	chr6:131209800-131228000	Weak transcription	HUVEC	blood vessel
8	chr6:131211000-131228400	Weak transcription	Small Intestine	intestine
9	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:131213600-131232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:131215000-131228800	Weak transcription	Liver	Liver
13	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
14	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
15	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
16	chr6:131215600-131228600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:131215600-131233800	Weak transcription	Pancreas	Pancrea
18	chr6:131215800-131228400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:131216600-131233800	Weak transcription	Ovary	ovary
20	chr6:131216800-131230200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:131218200-131228600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:131220800-131228400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:131220800-131228600	Weak transcription	Fetal Intestine Large	intestine
25	chr6:131220800-131228800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:131222200-131229200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:131222200-131229200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:131222200-131229200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:131222200-131230400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:131222200-131234000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:131222200-131234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:131222200-131234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
34	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
36	chr6:131222400-131228600	Weak transcription	HepG2	liver
37	chr6:131222400-131228800	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:131222400-131229000	Weak transcription	Brain Substantia Nigra	brain
39	chr6:131222400-131229000	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:131222400-131229000	Weak transcription	Left Ventricle	heart
41	chr6:131222400-131229200	Weak transcription	Brain Anterior Caudate	brain
42	chr6:131222400-131232800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:131222400-131233200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:131222400-131233200	Weak transcription	HSMMtube	muscle
45	chr6:131222400-131233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:131222400-131238200	Weak transcription	Dnd41	blood
47	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:131222600-131241200	Weak transcription	A549	lung
49	chr6:131223600-131229400	Weak transcription	Right Ventricle	heart
50	chr6:131223600-131233600	Weak transcription	Lung	lung

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