Variant report

Variant	rs6921455
Chromosome Location	chr6:131143383-131143384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10782244	0.82[AFR][1000 genomes]
rs1114644	0.89[EUR][1000 genomes]
rs13217139	0.83[EUR][1000 genomes]
rs1334689	0.82[AFR][1000 genomes]
rs1413753	0.88[EUR][1000 genomes]
rs1571911	0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1582055	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1999474	0.82[AFR][1000 genomes]
rs2008598	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039509	0.86[EUR][1000 genomes]
rs2039830	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2183969	0.81[EUR][1000 genomes]
rs2184408	0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3777446	0.81[EUR][1000 genomes]
rs4075265	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4895897	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4895898	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4897475	0.82[AFR][1000 genomes]
rs6536	0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6569706	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6569709	0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6569711	0.83[EUR][1000 genomes]
rs6908154	0.88[EUR][1000 genomes]
rs6908659	0.88[EUR][1000 genomes]
rs6933789	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6935267	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs6938309	0.82[AFR][1000 genomes]
rs6938735	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs761835	0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7738572	0.82[AFR][1000 genomes]
rs7741462	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7754351	0.81[EUR][1000 genomes]
rs7763473	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764383	0.89[EUR][1000 genomes]
rs7768048	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7769310	0.82[AFR][1000 genomes]
rs7773093	0.81[EUR][1000 genomes]
rs7774832	0.82[AFR][1000 genomes]
rs7775288	0.85[EUR][1000 genomes]
rs9285468	0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9321256	0.81[EUR][1000 genomes]
rs9375777	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9388858	0.88[EUR][1000 genomes]
rs9388867	0.82[AFR][1000 genomes]
rs9402298	0.82[AFR][1000 genomes]
rs955191	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs988749	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs998228	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131138400-131147400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:131142600-131147600	Enhancers	HepG2	liver

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