Variant report

Variant	rs2839942
Chromosome Location	chr6:131208498-131208499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:131207970-131208528	GM12878	blood:	n/a	chr6:131208295-131208310
2	MAFF	chr6:131208121-131208502	HepG2	liver:	n/a	chr6:131208293-131208311
3	MAFK	chr6:131208119-131208519	HepG2	liver:	n/a	chr6:131208295-131208310
4	MAFK	chr6:131208117-131208535	IMR90	lung:	n/a	chr6:131208295-131208310

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131206831..131209804-chr6:131436324..131438672,3	MCF-7	breast:

Variant related genes	Relation type
EPB41L2	TF binding region

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10499175	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10499176	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs10499178	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10499181	0.82[CHB][hapmap]
rs10782244	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13217139	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1334689	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1413753	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1571911	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1582055	0.86[CEU][hapmap]
rs17053471	0.85[ASN][1000 genomes]
rs17059669	0.85[ASN][1000 genomes]
rs17059726	1.00[CHB][hapmap];0.80[JPT][hapmap];0.94[ASN][1000 genomes]
rs17059735	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs17059739	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs17059760	1.00[CHB][hapmap];0.80[JPT][hapmap];0.94[ASN][1000 genomes]
rs17059787	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs17059799	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs17059801	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs17059808	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs17059810	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs17059851	1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059853	1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs17059909	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs17059938	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs17059968	0.88[CHB][hapmap]
rs17059974	0.88[CHB][hapmap]
rs17059981	0.88[CHB][hapmap]
rs1999473	0.93[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1999474	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2008598	0.80[CEU][hapmap]
rs2027117	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2039509	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2039830	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2183968	0.87[CHB][hapmap]
rs2183969	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2275064	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs2281488	0.86[ASN][1000 genomes]
rs2281489	0.86[ASN][1000 genomes]
rs3777433	0.93[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777437	0.96[ASN][1000 genomes]
rs3777443	0.96[ASN][1000 genomes]
rs3777444	0.98[ASN][1000 genomes]
rs3777446	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3777447	0.93[CHB][hapmap];0.96[ASN][1000 genomes]
rs3777448	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs3777451	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs3777456	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3822859	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs3822860	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs3822865	1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs4075265	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs4142581	1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs45577234	0.85[ASN][1000 genomes]
rs4895897	0.86[CEU][hapmap]
rs4895898	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4897475	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57211621	0.83[ASN][1000 genomes]
rs59036192	0.92[ASN][1000 genomes]
rs59271461	0.82[ASN][1000 genomes]
rs60732147	0.89[ASN][1000 genomes]
rs60954662	0.85[ASN][1000 genomes]
rs6569709	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs6569711	0.91[EUR][1000 genomes]
rs6908154	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6908659	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6938309	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6938735	0.82[EUR][1000 genomes]
rs714709	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs7738572	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7741462	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7748468	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7754351	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7766004	0.84[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7766505	0.87[EUR][1000 genomes]
rs7768048	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7769310	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7773093	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774832	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9285468	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321256	0.92[EUR][1000 genomes]
rs9375777	0.81[EUR][1000 genomes]
rs9388858	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9388867	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9402298	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs998228	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131214400	Weak transcription	Lung	lung
4	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
5	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
6	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
7	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
8	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
10	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
11	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:131177200-131209200	Weak transcription	HUVEC	blood vessel
16	chr6:131179200-131214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:131179600-131210600	Weak transcription	NHEK	skin
19	chr6:131179600-131215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:131181400-131214400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:131185800-131214400	Weak transcription	Thymus	Thymus
22	chr6:131187000-131214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:131187000-131223200	Weak transcription	Gastric	stomach
24	chr6:131187200-131216400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:131187400-131208600	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:131188200-131216400	Weak transcription	HSMMtube	muscle
27	chr6:131188800-131208800	Weak transcription	Primary B cells from cord blood	blood
28	chr6:131190400-131210600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:131190800-131210800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
33	chr6:131191200-131208600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:131191200-131208800	Weak transcription	Brain Angular Gyrus	brain
35	chr6:131191200-131210600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:131191200-131224200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
38	chr6:131191400-131211200	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:131191600-131210800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:131191600-131211200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:131191600-131214600	Weak transcription	Fetal Intestine Small	intestine
42	chr6:131194200-131222000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:131195800-131224200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:131198600-131224200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:131198800-131210800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:131201000-131222400	Strong transcription	Dnd41	blood
47	chr6:131201800-131214400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:131201800-131222000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:131203000-131211600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:131203600-131210000	Strong transcription	Fetal Muscle Trunk	muscle

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