Variant report

Variant	rs17059739
Chromosome Location	chr6:131192380-131192381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10499175	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10499176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10499181	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes]
rs1413753	0.89[ASN][1000 genomes]
rs17053471	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17059669	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17059787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17059851	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17059909	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17059938	0.88[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes]
rs17059963	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17059968	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17059974	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17059981	0.88[CHB][hapmap];1.00[AFR][1000 genomes]
rs1972244	1.00[AFR][1000 genomes]
rs1999473	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2183968	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2275064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2281488	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2281489	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2839942	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs3777433	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777443	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3777444	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3777447	0.93[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777456	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3822859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822860	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3822865	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4142572	1.00[AFR][1000 genomes]
rs4142581	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs45577234	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57211621	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58130017	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs59036192	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59271461	0.81[ASN][1000 genomes]
rs59627131	1.00[AFR][1000 genomes]
rs60215702	1.00[AFR][1000 genomes]
rs60697593	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60732147	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60877807	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60954662	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61625259	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6908154	0.89[ASN][1000 genomes]
rs6908659	0.89[ASN][1000 genomes]
rs714709	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72499769	1.00[AFR][1000 genomes]
rs9388858	0.89[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131214400	Weak transcription	Lung	lung
4	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
5	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
6	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
7	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
8	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
10	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
11	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
13	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
14	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
15	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:131175400-131194200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:131175400-131203600	Weak transcription	A549	lung
19	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:131175600-131205400	Weak transcription	NH-A	brain
21	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:131177200-131209200	Weak transcription	HUVEC	blood vessel
23	chr6:131179200-131214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:131179600-131210600	Weak transcription	NHEK	skin
26	chr6:131179600-131215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:131180000-131203200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:131181400-131193800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:131181400-131214400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:131183000-131192400	Weak transcription	Small Intestine	intestine
31	chr6:131183000-131192400	Weak transcription	Hela-S3	cervix
32	chr6:131184800-131193600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:131184800-131200800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:131185800-131214400	Weak transcription	Thymus	Thymus
35	chr6:131187000-131203200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:131187000-131207000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:131187000-131214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:131187000-131223200	Weak transcription	Gastric	stomach
39	chr6:131187200-131193200	Weak transcription	Liver	Liver
40	chr6:131187200-131216400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:131187400-131208600	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:131187600-131203400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:131188200-131216400	Weak transcription	HSMMtube	muscle
44	chr6:131188600-131197800	Weak transcription	HSMM	muscle
45	chr6:131188600-131203200	Weak transcription	NHDF-Ad	bronchial
46	chr6:131188800-131203600	Weak transcription	Placenta	Placenta
47	chr6:131188800-131208800	Weak transcription	Primary B cells from cord blood	blood
48	chr6:131190000-131192800	Strong transcription	Fetal Muscle Leg	muscle
49	chr6:131190400-131210600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links