Variant report

Variant	rs7748468
Chromosome Location	chr6:131256049-131256050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:
2	chr6:131251571..131254129-chr6:131255029..131257491,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1006655	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10782244	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13217139	0.92[EUR][1000 genomes]
rs1334689	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1571911	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs1571912	0.83[AMR][1000 genomes]
rs1582055	0.89[CEU][hapmap]
rs1999474	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2008598	0.84[CEU][hapmap]
rs2027117	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2039509	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2039830	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2105250	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2183969	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2184408	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2839942	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs3777446	0.93[EUR][1000 genomes]
rs4075265	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs4895897	0.89[CEU][hapmap]
rs4895898	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4897475	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6569709	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6569711	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6907284	0.83[CEU][hapmap]
rs6920493	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6938309	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938735	0.82[EUR][1000 genomes]
rs761835	0.80[CEU][hapmap]
rs7738572	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741462	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs7754351	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7756269	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7761655	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7766004	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7766505	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7768048	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs7769310	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773093	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774832	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285468	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs9321256	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9375777	0.81[EUR][1000 genomes]
rs9375786	0.89[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9388867	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9388870	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9388871	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402298	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9402304	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9402305	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9492764	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs966825	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs977140	0.81[AMR][1000 genomes]
rs9885632	0.82[CEU][hapmap]
rs998228	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
7	chr6:131251800-131256200	Weak transcription	Aorta	Aorta
8	chr6:131253000-131272800	Weak transcription	Dnd41	blood
9	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:131253400-131256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:131253600-131257000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:131253600-131257400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:131253600-131257400	Enhancers	Adipose Nuclei	Adipose
14	chr6:131253800-131256600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:131253800-131256600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:131253800-131257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:131253800-131257600	Enhancers	Osteobl	bone
18	chr6:131254000-131257200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:131254000-131258200	Enhancers	NHLF	lung
20	chr6:131254200-131257400	Enhancers	HSMM	muscle
21	chr6:131254200-131258200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:131254400-131257400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:131254800-131257600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
25	chr6:131255200-131256200	Weak transcription	Fetal Lung	lung
26	chr6:131255200-131256600	Enhancers	Brain Anterior Caudate	brain
27	chr6:131255200-131256800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:131255200-131257000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:131255200-131257800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:131255200-131258000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:131255200-131258200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:131255200-131262600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:131255200-131264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:131255200-131265000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:131255200-131265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
37	chr6:131255400-131256400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:131255400-131256400	Enhancers	Brain Cingulate Gyrus	brain
39	chr6:131255400-131256400	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:131255400-131256600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:131255400-131256800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:131255400-131256800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:131255400-131256800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:131255400-131256800	Enhancers	Brain Substantia Nigra	brain
45	chr6:131255400-131256800	Weak transcription	Fetal Intestine Large	intestine
46	chr6:131255400-131258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr6:131255400-131258200	Enhancers	A549	lung
48	chr6:131255400-131258200	Enhancers	HSMMtube	muscle
49	chr6:131255400-131259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:131255400-131259200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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