Variant report

Variant	rs17060042
Chromosome Location	chr13:40052570-40052571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1323939	1.00[MEX][hapmap]
rs1408177	1.00[MEX][hapmap]
rs1408180	1.00[MEX][hapmap]
rs17059785	1.00[MEX][hapmap]
rs17060035	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs60950256	0.87[AMR][1000 genomes]
rs6563703	0.85[AMR][1000 genomes]
rs73462896	1.00[AMR][1000 genomes]
rs73464815	1.00[AMR][1000 genomes]
rs7982709	0.87[AMR][1000 genomes]
rs7986356	1.00[AMR][1000 genomes]
rs7994955	1.00[MEX][hapmap]
rs9741222	1.00[MEX][hapmap]
rs9741239	0.87[AMR][1000 genomes]
rs9741636	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757529	chr13:40040036-40090742	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759933	chr13:40040036-40090742	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40037000-40053800	Weak transcription	Fetal Lung	lung
2	chr13:40037400-40053400	Weak transcription	Aorta	Aorta
3	chr13:40041600-40057800	Weak transcription	NHDF-Ad	bronchial
4	chr13:40043600-40068200	Weak transcription	Lung	lung
5	chr13:40046000-40058800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:40046800-40057800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:40049800-40055400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:40050000-40052800	Weak transcription	Right Atrium	heart
9	chr13:40050000-40053400	Weak transcription	Right Ventricle	heart
10	chr13:40050000-40057800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:40051000-40054200	Enhancers	Fetal Heart	heart
12	chr13:40051200-40054800	Enhancers	Ovary	ovary
13	chr13:40051400-40064400	Weak transcription	HSMMtube	muscle
14	chr13:40051600-40053200	Enhancers	Fetal Stomach	stomach
15	chr13:40051600-40057000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:40051800-40052800	Weak transcription	Left Ventricle	heart
17	chr13:40052000-40057400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr13:40052200-40054000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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