Variant report

Variant	rs73464815
Chromosome Location	chr13:40071855-40071856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17060035	0.87[AMR][1000 genomes]
rs17060042	1.00[AMR][1000 genomes]
rs60950256	0.87[AMR][1000 genomes]
rs6563703	0.85[AMR][1000 genomes]
rs73462896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7982709	0.87[AMR][1000 genomes]
rs7986356	1.00[AMR][1000 genomes]
rs9741239	0.87[AMR][1000 genomes]
rs9741636	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757529	chr13:40040036-40090742	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759933	chr13:40040036-40090742	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40059000-40073000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:40061600-40081000	Weak transcription	Osteobl	bone
3	chr13:40062600-40073000	Weak transcription	Psoas Muscle	Psoas
4	chr13:40064800-40081200	Weak transcription	HSMMtube	muscle
5	chr13:40065600-40075000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:40065600-40075200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:40067200-40074000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:40067600-40072400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:40067600-40074000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:40067600-40074200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:40067800-40078400	Enhancers	Fetal Heart	heart
12	chr13:40068400-40080800	Weak transcription	Fetal Brain Female	brain
13	chr13:40068600-40072200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:40068600-40072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:40068600-40073400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:40068600-40073600	Weak transcription	Brain Substantia Nigra	brain
17	chr13:40069200-40075000	Weak transcription	Lung	lung
18	chr13:40069200-40080400	Weak transcription	Aorta	Aorta
19	chr13:40070000-40072400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr13:40070000-40072600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr13:40070000-40073000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr13:40070000-40073000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr13:40070200-40073000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr13:40070200-40073800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr13:40071000-40072400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:40071000-40073000	Weak transcription	Fetal Muscle Leg	muscle
27	chr13:40071000-40073800	Weak transcription	Adipose Nuclei	Adipose
28	chr13:40071200-40072200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr13:40071200-40073000	Weak transcription	Left Ventricle	heart
30	chr13:40071200-40073600	Weak transcription	Fetal Brain Male	brain
31	chr13:40071400-40072000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr13:40071400-40072400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr13:40071400-40073000	Weak transcription	Right Atrium	heart
34	chr13:40071400-40073000	Weak transcription	Right Ventricle	heart
35	chr13:40071400-40075800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr13:40071400-40077200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr13:40071600-40072600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:40071600-40072800	Weak transcription	Ovary	ovary
39	chr13:40071800-40073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr13:40071800-40075600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr13:40071800-40076200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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