Variant report

Variant	rs17060445
Chromosome Location	chr4:175190509-175190510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:175181041..175183420-chr4:175187913..175190511,2	MCF-7	breast:
2	chr4:175184412..175187975-chr4:175189059..175193975,5	K562	blood:
3	chr4:175190016..175192606-chr4:175201922..175204827,4	K562	blood:
4	chr4:175189453..175192652-chr4:175201823..175204827,4	K562	blood:

Variant related genes	Relation type
ENSG00000164117	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11555602	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11929798	1.00[JPT][hapmap]
rs11933187	1.00[JPT][hapmap]
rs11942947	1.00[JPT][hapmap]
rs13101580	1.00[JPT][hapmap]
rs14278	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs17060409	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2332836	1.00[JPT][hapmap]
rs4695919	1.00[JPT][hapmap]
rs66565786	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67875138	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67936635	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67940320	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72702220	0.90[AFR][1000 genomes]
rs72702225	0.90[AFR][1000 genomes]
rs72702228	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72702234	1.00[ASN][1000 genomes]
rs72702236	1.00[ASN][1000 genomes]
rs72702242	1.00[ASN][1000 genomes]
rs72702244	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702246	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702249	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702250	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702258	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73009476	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656298	1.00[ASN][1000 genomes]
rs7664501	0.82[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7681841	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692518	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697587	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv881449	chr4:174984230-175225452	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175147600-175195200	Weak transcription	Psoas Muscle	Psoas
2	chr4:175151400-175192800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:175153400-175191600	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:175154200-175204000	Weak transcription	Aorta	Aorta
5	chr4:175154200-175204200	Weak transcription	Esophagus	oesophagus
6	chr4:175154400-175202400	Weak transcription	Gastric	stomach
7	chr4:175158800-175202000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:175159800-175199800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:175161000-175192400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:175169800-175203600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:175171800-175195200	Weak transcription	Pancreas	Pancrea
12	chr4:175174800-175199800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:175174800-175203400	Weak transcription	Thymus	Thymus
14	chr4:175175000-175196200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:175175000-175198600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr4:175177400-175197800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:175177600-175192000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:175178000-175198600	Weak transcription	K562	blood
19	chr4:175178000-175203600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:175178200-175191400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:175178200-175193800	Weak transcription	HSMMtube	muscle
22	chr4:175179200-175192200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr4:175179200-175204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:175179400-175202400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:175181000-175201600	Weak transcription	Fetal Thymus	thymus
26	chr4:175181600-175196200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:175181600-175203400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:175181600-175203600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:175182200-175202600	Weak transcription	Fetal Intestine Small	intestine
30	chr4:175184000-175195800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:175184200-175193600	Weak transcription	Lung	lung
32	chr4:175184200-175197800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:175184200-175199800	Weak transcription	Dnd41	blood
34	chr4:175184200-175202400	Weak transcription	Fetal Intestine Large	intestine
35	chr4:175184200-175203600	Weak transcription	HSMM	muscle
36	chr4:175184400-175200800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr4:175184400-175202400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:175184400-175202600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:175184400-175204000	Weak transcription	Left Ventricle	heart
40	chr4:175184800-175191200	Weak transcription	Ovary	ovary
41	chr4:175184800-175202400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:175187400-175198600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:175187600-175198600	Weak transcription	Fetal Brain Female	brain
44	chr4:175187800-175198600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:175187800-175202200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:175188000-175195200	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:175188000-175198200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:175188200-175198600	Weak transcription	GM12878-XiMat	blood
49	chr4:175188400-175195200	Weak transcription	Brain Hippocampus Middle	brain
50	chr4:175188400-175198000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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