Variant report

Variant	rs66565786
Chromosome Location	chr4:175155305-175155306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs14278	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17060409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17060445	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67875138	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67936635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67940320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72702214	0.85[AMR][1000 genomes]
rs72702219	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702220	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702225	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702227	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702228	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72702230	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702234	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702236	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72702242	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73009476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7656298	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7664501	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7681841	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7692518	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7697587	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv881449	chr4:174984230-175225452	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175146600-175158000	Weak transcription	Placenta	Placenta
2	chr4:175147000-175157000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:175147000-175157200	Weak transcription	Liver	Liver
4	chr4:175147000-175163000	Weak transcription	Fetal Stomach	stomach
5	chr4:175147600-175157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:175147600-175195200	Weak transcription	Psoas Muscle	Psoas
7	chr4:175149200-175158400	Weak transcription	Fetal Intestine Large	intestine
8	chr4:175149600-175158000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:175151000-175163200	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:175151400-175192800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:175151600-175158400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:175151600-175162600	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:175151800-175158000	Weak transcription	Primary B cells from cord blood	blood
14	chr4:175151800-175169400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:175151800-175181600	Weak transcription	Brain Angular Gyrus	brain
16	chr4:175152000-175156600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:175152000-175158400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:175152000-175158400	Weak transcription	Left Ventricle	heart
19	chr4:175152000-175165400	Weak transcription	NHDF-Ad	bronchial
20	chr4:175152200-175156400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:175152400-175157200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:175152400-175162000	Weak transcription	Brain Anterior Caudate	brain
23	chr4:175152600-175156400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:175152600-175169400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:175152600-175176400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:175153000-175156200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:175153000-175156600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:175153000-175158200	Weak transcription	Fetal Lung	lung
29	chr4:175153000-175158400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:175153000-175174200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:175153200-175156400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr4:175153200-175156600	Weak transcription	Primary T cells from cord blood	blood
33	chr4:175153200-175158200	Weak transcription	Pancreas	Pancrea
34	chr4:175153200-175169000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:175153200-175174600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:175153200-175184000	Weak transcription	Lung	lung
37	chr4:175153400-175156200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:175153400-175157200	Weak transcription	Fetal Intestine Small	intestine
39	chr4:175153400-175160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:175153400-175191600	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:175153800-175157200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:175153800-175158200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:175153800-175158200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:175154000-175157000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:175154000-175157200	Weak transcription	Fetal Thymus	thymus
46	chr4:175154000-175157200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:175154200-175157200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:175154200-175161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:175154200-175204000	Weak transcription	Aorta	Aorta
50	chr4:175154200-175204200	Weak transcription	Esophagus	oesophagus

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