Variant report

Variant	rs17061162
Chromosome Location	chr3:59738188-59738189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59736699..59738413-chr3:59739398..59742016,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1666064	0.81[ASN][1000 genomes]
rs6803318	0.85[ASN][1000 genomes]
rs73092687	0.81[ASN][1000 genomes]
rs73092688	0.81[ASN][1000 genomes]
rs73092690	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59723000-59738600	Weak transcription	Thymus	Thymus
2	chr3:59730000-59738600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:59731400-59739000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:59733200-59738800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:59733200-59740200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:59734200-59739800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:59734800-59738400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:59735400-59739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:59735600-59738400	Weak transcription	Dnd41	blood
10	chr3:59735600-59738800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:59735600-59738800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:59735600-59739400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:59735600-59739800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:59735800-59742400	Weak transcription	Ovary	ovary
15	chr3:59736000-59739600	Weak transcription	NHDF-Ad	bronchial
16	chr3:59736200-59738200	Weak transcription	Primary T cells from cord blood	blood
17	chr3:59736400-59738400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr3:59736400-59739600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:59736400-59739800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr3:59737200-59739400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:59737400-59740000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:59737600-59741600	Enhancers	Fetal Thymus	thymus
23	chr3:59738000-59739800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:59738000-59740200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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