Variant report

Variant	rs73092688
Chromosome Location	chr3:59742632-59742633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12152416	0.94[EUR][1000 genomes]
rs13313901	0.93[EUR][1000 genomes]
rs1349021	0.84[EUR][1000 genomes]
rs1550925	0.81[EUR][1000 genomes]
rs1666064	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1683349	0.81[EUR][1000 genomes]
rs17061162	0.81[ASN][1000 genomes]
rs17061173	0.94[EUR][1000 genomes]
rs477697	0.81[EUR][1000 genomes]
rs481165	0.81[EUR][1000 genomes]
rs6803318	0.95[ASN][1000 genomes]
rs73092687	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092690	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092698	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73092702	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73094508	0.95[EUR][1000 genomes]
rs73094588	0.94[EUR][1000 genomes]
rs73094593	0.94[EUR][1000 genomes]
rs9826481	0.95[EUR][1000 genomes]
rs9847591	0.95[EUR][1000 genomes]
rs9865682	0.95[EUR][1000 genomes]
rs993000	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
2	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:59740200-59743800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:59740200-59743800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:59740200-59744800	Weak transcription	Fetal Lung	lung
10	chr3:59740200-59746000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:59740400-59744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:59740400-59744000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:59740600-59743800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:59740600-59744000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:59740800-59743800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:59741000-59744600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:59741000-59744600	Weak transcription	NHDF-Ad	bronchial
18	chr3:59741000-59745000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:59741200-59744000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:59741200-59744800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:59741200-59745000	Weak transcription	Fetal Intestine Small	intestine
22	chr3:59741400-59744600	Weak transcription	Thymus	Thymus
23	chr3:59741400-59745000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:59741400-59746600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:59741600-59743200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:59741600-59744400	Weak transcription	Fetal Thymus	thymus
27	chr3:59741600-59744600	Weak transcription	Stomach Mucosa	stomach
28	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:59741800-59742800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:59742200-59744600	Weak transcription	Dnd41	blood
31	chr3:59742400-59743400	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr3:59742600-59743400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:59742600-59743400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:59742600-59745200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links