Variant report

Variant	rs17061173
Chromosome Location	chr3:59754178-59754179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12152416	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13313901	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1349021	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1550925	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1666064	0.81[EUR][1000 genomes]
rs1683347	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1683349	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17295070	0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs4679606	0.82[CHD][hapmap]
rs4679607	0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs477697	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs481165	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73092687	0.91[EUR][1000 genomes]
rs73092688	0.94[EUR][1000 genomes]
rs73092690	0.95[EUR][1000 genomes]
rs73092698	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73092702	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73094508	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73094588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826481	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9847591	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865682	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993000	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:59745200-59757000	Weak transcription	Dnd41	blood
4	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
9	chr3:59750400-59754600	Weak transcription	Fetal Brain Female	brain
10	chr3:59750400-59755000	Weak transcription	Fetal Thymus	thymus
11	chr3:59750800-59755000	Weak transcription	Fetal Brain Male	brain
12	chr3:59751400-59755000	Weak transcription	Primary T cells from cord blood	blood
13	chr3:59752600-59756600	Weak transcription	Osteobl	bone
14	chr3:59752600-59757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:59752600-59757200	Weak transcription	HSMMtube	muscle
16	chr3:59752800-59756400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:59752800-59756600	Weak transcription	NHDF-Ad	bronchial
18	chr3:59752800-59757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:59752800-59757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:59752800-59757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:59753000-59754800	Weak transcription	Fetal Lung	lung
22	chr3:59753400-59757200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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