Variant report

Variant	rs9865682
Chromosome Location	chr3:59747611-59747612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12152416	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13313901	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1349021	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1550925	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1666064	0.82[EUR][1000 genomes]
rs1683347	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1683349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061173	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17295070	0.87[ASN][1000 genomes]
rs4679607	0.82[ASN][1000 genomes]
rs477697	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs481165	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73092687	0.93[EUR][1000 genomes]
rs73092688	0.95[EUR][1000 genomes]
rs73092690	0.96[EUR][1000 genomes]
rs73092698	0.98[EUR][1000 genomes]
rs73092702	0.96[EUR][1000 genomes]
rs73094508	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094588	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73094593	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9826481	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9847591	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993000	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:59743400-59748400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:59743400-59750200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:59745000-59748800	Weak transcription	NHDF-Ad	bronchial
9	chr3:59745200-59757000	Weak transcription	Dnd41	blood
10	chr3:59745400-59751200	Weak transcription	Osteobl	bone
11	chr3:59745600-59747800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:59745600-59748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:59745600-59748400	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:59745600-59751200	Weak transcription	Fetal Lung	lung
15	chr3:59745600-59752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:59745800-59748200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:59746200-59750600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:59746400-59749000	Weak transcription	Stomach Mucosa	stomach
19	chr3:59746800-59749600	Weak transcription	Fetal Thymus	thymus
20	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:59747000-59751000	Weak transcription	Primary T cells from cord blood	blood
22	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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