Variant report

Variant	rs1550925
Chromosome Location	chr3:59751052-59751053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12152416	0.87[CEU][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13313901	0.87[CEU][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1349021	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1666064	0.95[EUR][1000 genomes]
rs1683347	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1683349	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17061173	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17295070	0.90[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs4679606	0.82[CHD][hapmap]
rs4679607	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs477697	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs481165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73092688	0.81[EUR][1000 genomes]
rs73092690	0.82[EUR][1000 genomes]
rs73092698	0.83[EUR][1000 genomes]
rs73092702	0.82[EUR][1000 genomes]
rs73094508	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73094588	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73094593	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826481	0.81[EUR][1000 genomes]
rs9847591	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865682	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993000	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:59745200-59757000	Weak transcription	Dnd41	blood
4	chr3:59745400-59751200	Weak transcription	Osteobl	bone
5	chr3:59745600-59751200	Weak transcription	Fetal Lung	lung
6	chr3:59745600-59752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:59748400-59752600	Enhancers	Fetal Muscle Leg	muscle
11	chr3:59748600-59752200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:59748800-59751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:59748800-59752800	Enhancers	NHDF-Ad	bronchial
14	chr3:59749400-59752800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:59750000-59751200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
18	chr3:59750400-59751200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:59750400-59754600	Weak transcription	Fetal Brain Female	brain
20	chr3:59750400-59755000	Weak transcription	Fetal Thymus	thymus
21	chr3:59750800-59753400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:59750800-59755000	Weak transcription	Fetal Brain Male	brain
23	chr3:59751000-59751400	Enhancers	Primary T cells from cord blood	blood
24	chr3:59751000-59753400	Enhancers	Fetal Stomach	stomach

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