Variant report

Variant	rs73094593
Chromosome Location	chr3:59754817-59754818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12152416	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13313901	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1349021	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1550925	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1666064	0.81[EUR][1000 genomes]
rs1683347	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1683349	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17061173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295070	0.90[ASN][1000 genomes]
rs4679607	0.85[ASN][1000 genomes]
rs477697	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs481165	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73092687	0.91[EUR][1000 genomes]
rs73092688	0.94[EUR][1000 genomes]
rs73092690	0.95[EUR][1000 genomes]
rs73092698	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73092702	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73094508	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73094588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826481	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9847591	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865682	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993000	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:59745200-59757000	Weak transcription	Dnd41	blood
3	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
8	chr3:59750400-59755000	Weak transcription	Fetal Thymus	thymus
9	chr3:59750800-59755000	Weak transcription	Fetal Brain Male	brain
10	chr3:59751400-59755000	Weak transcription	Primary T cells from cord blood	blood
11	chr3:59752600-59756600	Weak transcription	Osteobl	bone
12	chr3:59752600-59757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:59752600-59757200	Weak transcription	HSMMtube	muscle
14	chr3:59752800-59756400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:59752800-59756600	Weak transcription	NHDF-Ad	bronchial
16	chr3:59752800-59757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:59752800-59757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:59752800-59757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:59753400-59757200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:59754400-59757200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:59754600-59755200	Enhancers	Fetal Brain Female	brain
22	chr3:59754800-59755200	Enhancers	Fetal Lung	lung
23	chr3:59754800-59755400	Bivalent Enhancer	Thymus	Thymus

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