Variant report

Variant	rs4679606
Chromosome Location	chr3:59756364-59756365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12152416	0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs13313901	0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs1550925	0.82[CHD][hapmap]
rs1683347	0.82[ASN][1000 genomes]
rs17061173	0.82[CHD][hapmap]
rs17295070	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4679607	0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9826481	0.88[ASN][1000 genomes]
rs993000	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:59745200-59757000	Weak transcription	Dnd41	blood
3	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
8	chr3:59752600-59756600	Weak transcription	Osteobl	bone
9	chr3:59752600-59757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:59752600-59757200	Weak transcription	HSMMtube	muscle
11	chr3:59752800-59756400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:59752800-59756600	Weak transcription	NHDF-Ad	bronchial
13	chr3:59752800-59757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:59752800-59757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:59752800-59757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:59753400-59757200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:59754400-59757200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:59755000-59756600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:59755000-59756600	Strong transcription	Primary T cells from cord blood	blood
20	chr3:59755600-59756800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
22	chr3:59756000-59758000	Weak transcription	GM12878-XiMat	blood
23	chr3:59756200-59756800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:59756200-59760400	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links