Variant report

Variant	rs17061419
Chromosome Location	chr6:132892436-132892437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17061384	1.00[YRI][hapmap]
rs17061460	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132889800-132893200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:132891400-132892800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:132891600-132893000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:132892000-132892600	Enhancers	Brain Anterior Caudate	brain
5	chr6:132892000-132892800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:132892000-132893000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:132892000-132893200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:132892000-132894400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:132892400-132892800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:132892400-132892800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:132892400-132892800	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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