Variant report

Variant	rs17061384
Chromosome Location	chr6:132860543-132860544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132833459..132835564-chr6:132858519..132861211,2	K562	blood:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11758170	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195306	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209085	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209100	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210154	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061419	1.00[YRI][hapmap]
rs2066075	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2066076	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2066077	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153171	0.91[ASN][1000 genomes]
rs2153178	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2840835	0.80[JPT][hapmap]
rs58924219	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569807	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6918805	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743835	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7763434	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321350	1.00[ASW][hapmap];0.80[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs9402425	0.82[AMR][1000 genomes]
rs9483478	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493355	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493360	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493361	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9493362	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493363	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9493364	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493365	0.91[EUR][1000 genomes]
rs9493366	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493367	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17061384	MAP7	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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