Variant report

Variant	rs6918805
Chromosome Location	chr6:132867984-132867985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132867471..132868459-chr6:133089145..133089675,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11758170	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195306	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209085	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209100	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210154	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066075	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2066076	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2066077	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153171	0.91[ASN][1000 genomes]
rs2153178	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2840835	0.80[JPT][hapmap]
rs58924219	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569807	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7743835	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7763434	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321350	0.80[CEU][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes]
rs9402425	0.82[AMR][1000 genomes]
rs9483478	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493355	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493360	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493361	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9493362	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493363	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9493364	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493365	0.87[EUR][1000 genomes]
rs9493366	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493367	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv965661	chr6:132863738-132869400	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6918805	MAP7	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132866200-132869800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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