Variant report
| Variant | rs2153171 |
|---|---|
| Chromosome Location | chr6:132856069-132856070 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA1 | chr6:132855658-132856078 | HepG2 | liver: | n/a | n/a |
| 2 | FOXA1 | chr6:132855645-132856084 | HepG2 | liver: | n/a | n/a |
| 3 | EP300 | chr6:132855732-132856127 | HepG2 | liver: | n/a | n/a |
| 4 | HNF4A | chr6:132855733-132856076 | HepG2 | liver: | n/a | n/a |
| 5 | SP1 | chr6:132855593-132856100 | HepG2 | liver: | n/a | n/a |
| 6 | SETDB1 | chr6:132855296-132856107 | U2OS | brain: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:132855902..132859597-chr6:133135974..133139810,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TAAR9 | TF binding region |
| ENSG00000221500 | Chromatin interaction |
| ENSG00000206754 | Chromatin interaction |
| ENSG00000200534 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11758170 | 0.91[ASN][1000 genomes] |
| rs12195402 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12209085 | 0.91[ASN][1000 genomes] |
| rs12209100 | 0.91[ASN][1000 genomes] |
| rs17061384 | 0.91[ASN][1000 genomes] |
| rs2066075 | 0.80[ASN][1000 genomes] |
| rs2066076 | 0.90[ASN][1000 genomes] |
| rs2066077 | 0.91[ASN][1000 genomes] |
| rs6569806 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6918805 | 0.91[ASN][1000 genomes] |
| rs9483478 | 0.90[ASN][1000 genomes] |
| rs9493366 | 0.91[ASN][1000 genomes] |
| rs9493367 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132855800-132856400 | Enhancers | HepG2 | liver |
