Variant report

Variant	rs12209085
Chromosome Location	chr6:132855871-132855872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:132855658-132856078	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:132855645-132856084	HepG2	liver:	n/a	n/a
3	FOXA1	chr6:132855675-132856056	HepG2	liver:	n/a	n/a
4	FOXA1	chr6:132855647-132856034	HepG2	liver:	n/a	n/a
5	NR2F2	chr6:132855770-132856063	HepG2	liver:	n/a	n/a
6	FOXA2	chr6:132855731-132856004	HepG2	liver:	n/a	n/a
7	JUND	chr6:132855747-132856034	HepG2	liver:	n/a	n/a
8	RXRA	chr6:132855662-132856042	HepG2	liver:	n/a	n/a
9	EP300	chr6:132855654-132856038	HepG2	liver:	n/a	n/a
10	EP300	chr6:132855732-132856127	HepG2	liver:	n/a	n/a
11	HNF4A	chr6:132855733-132856076	HepG2	liver:	n/a	n/a
12	SP1	chr6:132855593-132856100	HepG2	liver:	n/a	n/a
13	SETDB1	chr6:132855296-132856107	U2OS	brain:	n/a	n/a
14	NR2F2	chr6:132855770-132856026	HepG2	liver:	n/a	n/a
15	USF1	chr6:132855733-132855926	HepG2	liver:	n/a	chr6:132855829-132855840 chr6:132855864-132855875

Variant related genes	Relation type
TAAR9	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11758170	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195306	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209100	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210154	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061384	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066075	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2066076	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2066077	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153171	0.91[ASN][1000 genomes]
rs2153178	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58924219	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569807	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6918805	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743835	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7763434	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9483478	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493355	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493360	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493361	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9493362	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493363	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9493364	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493365	0.91[EUR][1000 genomes]
rs9493366	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493367	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132855800-132856400	Enhancers	HepG2	liver

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