Variant report

Variant	rs12195306
Chromosome Location	chr6:132847368-132847369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11758170	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12195402	0.91[ASN][1000 genomes]
rs12209085	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209100	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12210154	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061384	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2066075	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2066076	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2066077	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2153178	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58924219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569806	0.91[ASN][1000 genomes]
rs6569807	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918805	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7743835	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763434	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321350	0.80[CEU][hapmap]
rs9483478	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493355	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493360	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493361	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493362	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493363	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493364	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493365	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493366	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9493367	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132843400-132851200	Weak transcription	Osteobl	bone
2	chr6:132846000-132847400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:132846200-132847400	Enhancers	Fetal Brain Male	brain
4	chr6:132846200-132848000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132846800-132848200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:132847000-132847800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:132847000-132848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:132847000-132848200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:132847200-132847400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:132847200-132847800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:132847200-132847800	Enhancers	Cortex derived primary cultured neurospheres	brain

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