Variant report

Variant	rs6569806
Chromosome Location	chr6:132846989-132846990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12195306	0.91[ASN][1000 genomes]
rs12195402	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210154	0.91[ASN][1000 genomes]
rs2066075	0.85[ASN][1000 genomes]
rs2153171	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2153178	0.90[ASN][1000 genomes]
rs58924219	0.91[ASN][1000 genomes]
rs6569807	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7743835	0.91[ASN][1000 genomes]
rs7763434	0.91[ASN][1000 genomes]
rs9493355	0.91[ASN][1000 genomes]
rs9493360	0.91[ASN][1000 genomes]
rs9493361	0.91[ASN][1000 genomes]
rs9493362	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9493363	0.91[ASN][1000 genomes]
rs9493364	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132843400-132851200	Weak transcription	Osteobl	bone
2	chr6:132846000-132847400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:132846200-132847400	Enhancers	Fetal Brain Male	brain
4	chr6:132846200-132848000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132846800-132848200	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links