Variant report

Variant	rs12195402
Chromosome Location	chr6:132847540-132847541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12195306	0.91[ASN][1000 genomes]
rs12210154	0.91[ASN][1000 genomes]
rs2066075	0.85[ASN][1000 genomes]
rs2153171	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2153178	0.90[ASN][1000 genomes]
rs58924219	0.91[ASN][1000 genomes]
rs6569806	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569807	0.91[ASN][1000 genomes]
rs7743835	0.91[ASN][1000 genomes]
rs7763434	0.91[ASN][1000 genomes]
rs9493355	0.91[ASN][1000 genomes]
rs9493360	0.91[ASN][1000 genomes]
rs9493361	0.91[ASN][1000 genomes]
rs9493362	0.91[ASN][1000 genomes]
rs9493363	0.91[ASN][1000 genomes]
rs9493364	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132843400-132851200	Weak transcription	Osteobl	bone
2	chr6:132846200-132848000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:132846800-132848200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:132847000-132847800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:132847000-132848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132847000-132848200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:132847200-132847800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:132847200-132847800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:132847400-132847600	Enhancers	Fetal Brain Female	brain
10	chr6:132847400-132848200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:132847400-132848400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:132847400-132848600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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