Variant report

Variant	rs17062398
Chromosome Location	chr9:78913657-78913658
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:78624133..78625062-chr9:78913423..78914349,5	MCF-7	breast:
2	chr9:78593987..78594566-chr9:78913006..78913887,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12684940	1.00[ASN][1000 genomes]
rs17062410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062412	1.00[ASN][1000 genomes]
rs61744750	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62565669	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025902	1.00[ASN][1000 genomes]
rs7028066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039902	1.00[ASN][1000 genomes]
rs7040027	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv508552	chr9:78864913-78956326	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv893477	chr9:78892526-78932928	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv1010025	chr9:78912186-78922397	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78883000-78917200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:78903400-78917600	Weak transcription	Stomach Mucosa	stomach
3	chr9:78905800-78922400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:78911600-78913800	Genic enhancers	Fetal Intestine Small	intestine
5	chr9:78912000-78916000	Strong transcription	Duodenum Mucosa	Duodenum
6	chr9:78912000-78917600	Strong transcription	Fetal Intestine Large	intestine
7	chr9:78912200-78913800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:78912200-78913800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:78912400-78913800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:78912400-78927800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:78912600-78913800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:78912800-78915200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:78913000-78913800	Enhancers	Ovary	ovary
14	chr9:78913000-78914000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:78913000-78914000	Enhancers	Fetal Stomach	stomach
16	chr9:78913000-78914200	Enhancers	Fetal Kidney	kidney
17	chr9:78913200-78913800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:78913200-78913800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:78913200-78913800	Enhancers	Fetal Lung	lung
20	chr9:78913200-78914000	Enhancers	Fetal Muscle Leg	muscle
21	chr9:78913200-78918000	Weak transcription	Placenta	Placenta
22	chr9:78913400-78913800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:78913400-78913800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:78913400-78913800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:78913400-78914000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:78913400-78914000	Enhancers	Adipose Nuclei	Adipose
27	chr9:78913400-78914200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr9:78913400-78914200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:78913400-78935200	Weak transcription	Small Intestine	intestine
30	chr9:78913600-78913800	Bivalent Enhancer	NHDF-Ad	bronchial
31	chr9:78913600-78915200	Weak transcription	HSMMtube	muscle

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