Variant report

Variant	rs7039902
Chromosome Location	chr9:78912008-78912009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12684940	1.00[ASN][1000 genomes]
rs17062398	1.00[ASN][1000 genomes]
rs17062410	1.00[ASN][1000 genomes]
rs17062412	1.00[ASN][1000 genomes]
rs61744750	1.00[ASN][1000 genomes]
rs62565669	1.00[ASN][1000 genomes]
rs7025902	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028066	1.00[ASN][1000 genomes]
rs7040027	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv508552	chr9:78864913-78956326	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv893477	chr9:78892526-78932928	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78883000-78917200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:78903400-78917600	Weak transcription	Stomach Mucosa	stomach
3	chr9:78905800-78922400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:78906000-78912800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:78907800-78912200	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:78908000-78912200	Weak transcription	Adipose Nuclei	Adipose
7	chr9:78908000-78912200	Weak transcription	NHLF	lung
8	chr9:78908000-78912600	Weak transcription	Ovary	ovary
9	chr9:78908800-78912400	Enhancers	Fetal Muscle Leg	muscle
10	chr9:78909400-78912200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:78909600-78912400	Weak transcription	HUVEC	blood vessel
12	chr9:78910400-78912200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:78911000-78912200	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:78911400-78913000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:78911400-78913000	Enhancers	HSMM	muscle
16	chr9:78911600-78912200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:78911600-78912400	Enhancers	Fetal Stomach	stomach
18	chr9:78911600-78912800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:78911600-78913400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:78911600-78913800	Genic enhancers	Fetal Intestine Small	intestine
21	chr9:78911800-78912200	Enhancers	Fetal Kidney	kidney
22	chr9:78911800-78912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:78911800-78912400	Genic enhancers	Rectal Mucosa Donor 29	rectum
24	chr9:78911800-78912600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:78911800-78912800	Enhancers	Small Intestine	intestine
26	chr9:78911800-78913000	Flanking Active TSS	HSMMtube	muscle
27	chr9:78912000-78912200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:78912000-78912600	Enhancers	Fetal Lung	lung
29	chr9:78912000-78913000	Enhancers	Fetal Thymus	thymus
30	chr9:78912000-78913600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr9:78912000-78916000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr9:78912000-78917600	Strong transcription	Fetal Intestine Large	intestine

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