Variant report

Variant	rs17062870
Chromosome Location	chr9:79292352-79292353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs476612	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs526596	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs680949	1.00[CEU][hapmap]
rs7856516	0.84[EUR][1000 genomes]
rs7862059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79270400-79303000	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:79278200-79303400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:79282600-79292400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:79283000-79302600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:79283000-79303000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:79283800-79302000	Weak transcription	Aorta	Aorta
8	chr9:79290400-79306000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:79291400-79292400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:79291400-79292400	Enhancers	HSMM	muscle
11	chr9:79291600-79292800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:79291600-79293000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:79291600-79293000	Flanking Active TSS	HUVEC	blood vessel
14	chr9:79291800-79292600	Active TSS	K562	blood
15	chr9:79291800-79293000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:79292000-79293000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:79292200-79292400	Enhancers	Osteobl	bone
18	chr9:79292200-79292600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr9:79292200-79292800	Enhancers	Fetal Muscle Leg	muscle
20	chr9:79292200-79292800	Enhancers	HSMMtube	muscle
21	chr9:79292200-79293000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:79292200-79293000	Enhancers	NH-A	brain
23	chr9:79292200-79301800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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