Variant report

Variant	rs476612
Chromosome Location	chr9:79300111-79300112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17062870	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs526596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs618944	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs680949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79270400-79303000	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:79278200-79303400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:79283000-79302600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:79283000-79303000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:79283800-79302000	Weak transcription	Aorta	Aorta
7	chr9:79290400-79306000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:79292200-79301800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:79292800-79300200	Weak transcription	HSMMtube	muscle
10	chr9:79293000-79300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:79293000-79302000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:79293000-79302000	Weak transcription	HSMM	muscle
13	chr9:79293000-79302200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:79293200-79301600	Weak transcription	Stomach Mucosa	stomach
15	chr9:79295400-79303000	Weak transcription	Brain Angular Gyrus	brain
16	chr9:79296000-79303000	Weak transcription	Brain Hippocampus Middle	brain
17	chr9:79296600-79300600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:79296600-79301800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:79296600-79302000	Weak transcription	Osteobl	bone
20	chr9:79296800-79304800	Weak transcription	Fetal Thymus	thymus
21	chr9:79298200-79303600	Weak transcription	Small Intestine	intestine
22	chr9:79298800-79303200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:79299400-79302400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:79299400-79303400	Weak transcription	Brain Anterior Caudate	brain
25	chr9:79299400-79303400	Weak transcription	Brain Substantia Nigra	brain
26	chr9:79299600-79302200	Weak transcription	HUVEC	blood vessel

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