Variant report

Variant	rs17063308
Chromosome Location	chr6:134372530-134372531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134273314..134277341-chr6:134371733..134374606,4	K562	blood:
2	chr6:134366801..134368820-chr6:134370754..134372859,2	K562	blood:
3	chr6:134367426..134370394-chr6:134371254..134373715,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17063315	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916329	0.95[EUR][1000 genomes]
rs6941795	0.87[EUR][1000 genomes]
rs73776510	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134362800-134372800	Weak transcription	K562	blood
2	chr6:134362800-134373200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:134363000-134372800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:134363000-134372800	Weak transcription	NHEK	skin
5	chr6:134368200-134373200	Weak transcription	Thymus	Thymus
6	chr6:134369000-134372600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:134369200-134373000	Weak transcription	HSMMtube	muscle
8	chr6:134369200-134373200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:134369200-134373200	Weak transcription	Lung	lung
10	chr6:134369600-134372800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:134370200-134372800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:134370400-134372600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:134370400-134372800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:134370800-134372600	Enhancers	Brain Angular Gyrus	brain
15	chr6:134370800-134372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:134370800-134373000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:134371000-134372800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:134371200-134372600	Weak transcription	HepG2	liver
19	chr6:134371200-134372600	Weak transcription	NHLF	lung
20	chr6:134371200-134372800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:134371400-134372800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:134371600-134372600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:134371600-134372800	Enhancers	Fetal Lung	lung
24	chr6:134371800-134372600	Weak transcription	Liver	Liver
25	chr6:134371800-134372800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:134371800-134372800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:134371800-134372800	Enhancers	Aorta	Aorta
28	chr6:134371800-134372800	Enhancers	Psoas Muscle	Psoas
29	chr6:134371800-134374000	Active TSS	Left Ventricle	heart
30	chr6:134371800-134374200	Active TSS	Right Atrium	heart
31	chr6:134372000-134372600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:134372000-134374000	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr6:134372200-134372800	Enhancers	Fetal Intestine Small	intestine
34	chr6:134372200-134373200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:134372400-134372600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:134372400-134372600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:134372400-134372600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr6:134372400-134372800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:134372400-134372800	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr6:134372400-134372800	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr6:134372400-134372800	Enhancers	Brain Substantia Nigra	brain
42	chr6:134372400-134372800	Enhancers	HMEC	breast
43	chr6:134372400-134372800	Enhancers	NH-A	brain
44	chr6:134372400-134373000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:134372400-134373000	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr6:134372400-134373000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:134372400-134373200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:134372400-134373200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:134372400-134373200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:134372400-134373800	Active TSS	Brain Inferior Temporal Lobe	brain

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