Variant report

Variant	rs17064579
Chromosome Location	chr8:1998103-1998104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17064570	0.95[AFR][1000 genomes]
rs17064574	1.00[AFR][1000 genomes]
rs17064583	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17064586	0.89[AFR][1000 genomes]
rs17064597	0.95[AFR][1000 genomes]
rs3824187	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991200-1998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:1993800-1998200	Weak transcription	Pancreas	Pancrea
4	chr8:1994800-1998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:1994800-2000000	Enhancers	Fetal Heart	heart
6	chr8:1995400-1998800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:1995400-1998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:1995600-1998800	Weak transcription	HSMMtube	muscle
9	chr8:1997200-1999800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr8:1997200-2001200	Enhancers	Psoas Muscle	Psoas
11	chr8:1997400-1998800	Enhancers	Stomach Mucosa	stomach
12	chr8:1997400-1999000	Active TSS	Right Atrium	heart
13	chr8:1997600-1999800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr8:1997800-1998200	Enhancers	Duodenum Mucosa	Duodenum
15	chr8:1997800-1998200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
16	chr8:1997800-1999200	Enhancers	Fetal Intestine Large	intestine
17	chr8:1997800-2000000	Enhancers	Fetal Intestine Small	intestine
18	chr8:1997800-2000400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr8:1998000-1998200	Flanking Active TSS	Colonic Mucosa	Colon
20	chr8:1998000-1998200	Flanking Active TSS	Left Ventricle	heart
21	chr8:1998000-1998200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr8:1998000-1998200	Flanking Active TSS	Right Ventricle	heart
23	chr8:1998000-2000000	Enhancers	Fetal Muscle Leg	muscle
24	chr8:1998000-2000800	Enhancers	Gastric	stomach

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