Variant report

Variant	rs3824187
Chromosome Location	chr8:1999962-1999963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17064574	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17064579	0.84[AFR][1000 genomes]
rs3779861	0.83[ASN][1000 genomes]
rs4876236	0.92[ASN][1000 genomes]
rs58721325	1.00[AMR][1000 genomes]
rs7463722	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:1994800-2000000	Enhancers	Fetal Heart	heart
3	chr8:1997200-2001200	Enhancers	Psoas Muscle	Psoas
4	chr8:1997800-2000000	Enhancers	Fetal Intestine Small	intestine
5	chr8:1997800-2000400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr8:1998000-2000000	Enhancers	Fetal Muscle Leg	muscle
7	chr8:1998000-2000800	Enhancers	Gastric	stomach
8	chr8:1998200-2000200	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr8:1998200-2000200	Enhancers	Pancreas	Pancrea
10	chr8:1998800-2000000	Enhancers	Lung	lung
11	chr8:1998800-2000200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:1998800-2000200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:1998800-2003000	Enhancers	HSMMtube	muscle
14	chr8:1999000-2000800	Enhancers	Fetal Brain Female	brain
15	chr8:1999000-2000800	Enhancers	Stomach Mucosa	stomach
16	chr8:1999000-2005400	Weak transcription	Right Atrium	heart
17	chr8:1999200-2000200	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:1999200-2003400	Enhancers	HSMM	muscle
19	chr8:1999400-2000000	Enhancers	Brain Germinal Matrix	brain
20	chr8:1999600-2000000	Weak transcription	Left Ventricle	heart
21	chr8:1999600-2000200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:1999600-2000200	Bivalent Enhancer	Hela-S3	cervix
23	chr8:1999600-2000600	Enhancers	Brain Angular Gyrus	brain
24	chr8:1999600-2000800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr8:1999800-2000000	Enhancers	Brain Substantia Nigra	brain
26	chr8:1999800-2000000	Bivalent Enhancer	Fetal Brain Male	brain
27	chr8:1999800-2000000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr8:1999800-2000000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr8:1999800-2000000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
30	chr8:1999800-2000000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr8:1999800-2000000	Bivalent Enhancer	Small Intestine	intestine
32	chr8:1999800-2000200	Enhancers	Brain Anterior Caudate	brain
33	chr8:1999800-2000200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr8:1999800-2000200	Enhancers	Colonic Mucosa	Colon
35	chr8:1999800-2000800	Enhancers	Right Ventricle	heart
36	chr8:1999800-2001000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle

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