Variant report

Variant	rs58721325
Chromosome Location	chr8:1981491-1981492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:1981465-1981515	NHBE	bronchial:	n/a
2	chr8:1981465-1981515	MCF10A-Er-Src	breast:	n/a
3	chr8:1981465-1981515	CMK	blood:	n/a
4	chr8:1981465-1981515	ProgFib	skin:	n/a
5	chr8:1981465-1981515	HEK293	kidney:	embryo
6	chr8:1981465-1981515	HPAEpiC	pulmonary alveolar:	n/a
7	chr8:1981465-1981515	Hepatocyte	liver:	n/a
8	chr8:1981465-1981515	HepG2	liver:	n/a
9	chr8:1981465-1981515	PrEC	prostate:	n/a
10	chr8:1981465-1981515	NT2-D1	testis:	n/a
11	chr8:1981465-1981515	AG10803	skin:	n/a
12	chr8:1981465-1981515	AG04450	lung:	fetal
13	chr8:1981465-1981515	HUVEC	blood vessel:	n/a
14	chr8:1981465-1981515	GM06990	blood:	n/a
15	chr8:1981465-1981515	HCT-116	colon:	n/a
16	chr8:1981465-1981515	RPTEC	kidney:	n/a
17	chr8:1981465-1981515	Hela-S3	cervix:	n/a
18	chr8:1981465-1981515	PANC-1	pancreas:	n/a
19	chr8:1981465-1981515	NHDF-neo	bronchial:	n/a
20	chr8:1981465-1981515	MCF-7	breast:	n/a
21	chr8:1981465-1981515	HMEC	breast:	n/a
22	chr8:1981465-1981515	H1-hESC	embryonic stem cell:	embryo
23	chr8:1981465-1981515	Jurkat	blood:	n/a
24	chr8:1981465-1981515	HNPCEpiC	eye:	n/a
25	chr8:1981465-1981515	BE2_C	brain:	n/a
26	chr8:1981465-1981515	NH-A	brain:	n/a
27	chr8:1981465-1981515	HCF	heart:	n/a
28	chr8:1981465-1981515	SKMC	muscle:	n/a
29	chr8:1981465-1981515	HL-60	blood:	n/a
30	chr8:1981465-1981515	A549	lung:	n/a
31	chr8:1981465-1981515	HEEpiC	esophagus:	n/a
32	chr8:1981465-1981515	SK-N-SH	brain:	n/a
33	chr8:1981465-1981515	Caco-2	colon:	n/a
34	chr8:1981465-1981515	AoSMC	blood vessel:	n/a
35	chr8:1981465-1981515	AG04449	skin:	fetal
36	chr8:1981465-1981515	T-47D	breast:	n/a
37	chr8:1981465-1981515	SK-N-MC	brain:	n/a
38	chr8:1981465-1981515	SAEC	small airway:	n/a
39	chr8:1981465-1981515	PFSK-1	brain:	n/a
40	chr8:1981465-1981515	LNCaP	prostate:	n/a
41	chr8:1981465-1981515	HIPEpiC	eye:	n/a
42	chr8:1981465-1981515	ovcar-3	ovarian:	n/a
43	chr8:1981465-1981515	K562	blood:	n/a
44	chr8:1981465-1981515	BJ	skin:	n/a
45	chr8:1981465-1981515	GM12878	blood:	n/a
46	chr8:1981465-1981515	HRE	kidney:	n/a
47	chr8:1981465-1981515	HCPEpiC	choroid plexus:	n/a
48	chr8:1981465-1981515	GM19239	blood:	n/a
49	chr8:1981465-1981515	GM12892	blood:	n/a
50	chr8:1981465-1981515	IMR90	lung:	fetal

No data

Variant related genes	Relation type
ENSG00000253805	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17064574	0.83[AMR][1000 genomes]
rs3824187	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1972200-1981600	Weak transcription	Spleen	Spleen
2	chr8:1975200-1983200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:1979200-1981800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:1981200-1981600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr8:1981400-1981600	Enhancers	Fetal Brain Male	brain
6	chr8:1981400-1982000	Enhancers	Right Atrium	heart
7	chr8:1981400-1982400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:1981400-1985000	Enhancers	Fetal Heart	heart

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